miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 42434 0.68 0.988779
Target:  5'- uGGAAGAUggugUugAUGUGaCGGCUGUg-- -3'
miRNA:   3'- -CCUUUUAa---AugUGCAC-GCCGACGggc -5'
23562 5' -49.5 NC_005261.1 + 31775 0.66 0.997949
Target:  5'- -------cUGCGCGccGCGGUgcUGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCa-CGCCG--ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 34036 0.66 0.997949
Target:  5'- --------gGCGCGgcgcGCGcGCUGCCCu -3'
miRNA:   3'- ccuuuuaaaUGUGCa---CGC-CGACGGGc -5'
23562 5' -49.5 NC_005261.1 + 29585 0.71 0.940092
Target:  5'- --------gGCGCGUGCagGGCUGCCgGg -3'
miRNA:   3'- ccuuuuaaaUGUGCACG--CCGACGGgC- -5'
23562 5' -49.5 NC_005261.1 + 57916 0.79 0.572962
Target:  5'- cGGAAGAcggcccGCACGcGCGuGCUGCCCGg -3'
miRNA:   3'- -CCUUUUaaa---UGUGCaCGC-CGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 97961 0.66 0.997549
Target:  5'- aGGGAGGUggcgGCGgaGCGG-UGCCCGg -3'
miRNA:   3'- -CCUUUUAaaugUGCa-CGCCgACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 127708 0.72 0.92415
Target:  5'- cGGAGGAgcUGCGCGUG-GcCUGCCUGg -3'
miRNA:   3'- -CCUUUUaaAUGUGCACgCcGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 63782 0.7 0.961501
Target:  5'- aGGuccacgUGCGCGcGCGGCUGCgUGa -3'
miRNA:   3'- -CCuuuuaaAUGUGCaCGCCGACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 50087 0.69 0.97692
Target:  5'- --cAGAUgacCACGUGCacGCUGCCCGc -3'
miRNA:   3'- ccuUUUAaauGUGCACGc-CGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 69750 0.69 0.981598
Target:  5'- aGGAGGAggcgaGCGCGggggGCGGC-GCCgGg -3'
miRNA:   3'- -CCUUUUaaa--UGUGCa---CGCCGaCGGgC- -5'
23562 5' -49.5 NC_005261.1 + 68692 0.68 0.985526
Target:  5'- uGGggGccg-GCGCGgacgacgGCGGCgccgGCCCu -3'
miRNA:   3'- -CCuuUuaaaUGUGCa------CGCCGa---CGGGc -5'
23562 5' -49.5 NC_005261.1 + 37881 0.68 0.990176
Target:  5'- --------gGCGCGUGCuGgaGCCCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCACGcCgaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 30262 0.67 0.991432
Target:  5'- --------cGCGCGgcGCGGCgGCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCa-CGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 50444 0.67 0.993564
Target:  5'- -------gUGCGCGUGaaGCUGCgCCGg -3'
miRNA:   3'- ccuuuuaaAUGUGCACgcCGACG-GGC- -5'
23562 5' -49.5 NC_005261.1 + 11948 0.67 0.994457
Target:  5'- ---------cCGCG-GCGGCUcGCCCGg -3'
miRNA:   3'- ccuuuuaaauGUGCaCGCCGA-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 106026 0.67 0.995247
Target:  5'- aGGAccGGAg--GCACGccacCGcGCUGCCCGg -3'
miRNA:   3'- -CCU--UUUaaaUGUGCac--GC-CGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 39719 0.66 0.996554
Target:  5'- gGGGAGGgggUUugGgGgGCGGgUGCCCc -3'
miRNA:   3'- -CCUUUUa--AAugUgCaCGCCgACGGGc -5'
23562 5' -49.5 NC_005261.1 + 81970 0.66 0.997087
Target:  5'- --------aGCGCGguguucgGCGGCUGCgCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCa------CGCCGACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 6133 0.68 0.985526
Target:  5'- --------aGCGCGUcGCGGCcGCCCu -3'
miRNA:   3'- ccuuuuaaaUGUGCA-CGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 107325 0.67 0.994457
Target:  5'- cGGGAGGg--GC-CGgGCGGCcccaGCCCGa -3'
miRNA:   3'- -CCUUUUaaaUGuGCaCGCCGa---CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.