miRNA display CGI


Results 41 - 60 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 29415 0.66 0.997087
Target:  5'- -------cUACGCG-GCGGCcgcgggGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCaCGCCGa-----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 46744 0.69 0.981598
Target:  5'- -------gUGCACGUGCcGCaGCCCGc -3'
miRNA:   3'- ccuuuuaaAUGUGCACGcCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 67121 0.73 0.87785
Target:  5'- --------cGCGCaGUGCGGCgGCCCGa -3'
miRNA:   3'- ccuuuuaaaUGUG-CACGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 4032 0.68 0.983651
Target:  5'- ---------cCACGUGCGGCagcGCCCa -3'
miRNA:   3'- ccuuuuaaauGUGCACGCCGa--CGGGc -5'
23562 5' -49.5 NC_005261.1 + 90190 0.67 0.995247
Target:  5'- gGGAGGAcgcagggaGCGCGgggGCGGCggagcGCCCu -3'
miRNA:   3'- -CCUUUUaaa-----UGUGCa--CGCCGa----CGGGc -5'
23562 5' -49.5 NC_005261.1 + 95159 0.66 0.997549
Target:  5'- cGGGAAcc-UGCA-GUGCGGCgagggggacgUGCCCc -3'
miRNA:   3'- -CCUUUuaaAUGUgCACGCCG----------ACGGGc -5'
23562 5' -49.5 NC_005261.1 + 97961 0.66 0.997549
Target:  5'- aGGGAGGUggcgGCGgaGCGG-UGCCCGg -3'
miRNA:   3'- -CCUUUUAaaugUGCa-CGCCgACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 129218 0.67 0.993564
Target:  5'- -------cUGCugGUGCGGC-GCCUc -3'
miRNA:   3'- ccuuuuaaAUGugCACGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 82965 0.68 0.988779
Target:  5'- cGGAAGAcguggUGCGCGUcgagcacggagGCGGCcGCCUc -3'
miRNA:   3'- -CCUUUUaa---AUGUGCA-----------CGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 79115 0.68 0.990176
Target:  5'- cGGGAGAUguaccggUACGCcaggaagGCGGCcaccaGCCCGg -3'
miRNA:   3'- -CCUUUUAa------AUGUGca-----CGCCGa----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 11948 0.67 0.994457
Target:  5'- ---------cCGCG-GCGGCUcGCCCGg -3'
miRNA:   3'- ccuuuuaaauGUGCaCGCCGA-CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 32368 0.66 0.997087
Target:  5'- cGGGAGAc--GCugGUGCaGGCgcgGCgCGg -3'
miRNA:   3'- -CCUUUUaaaUGugCACG-CCGa--CGgGC- -5'
23562 5' -49.5 NC_005261.1 + 31390 0.7 0.960393
Target:  5'- cGAGGAcgUGCGCGUgGUGGUgcucuacgacccgcUGCCCGg -3'
miRNA:   3'- cCUUUUaaAUGUGCA-CGCCG--------------ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 127374 0.7 0.965041
Target:  5'- aGGAugucgUugGCG-GCGGCgaggaGCCCGg -3'
miRNA:   3'- -CCUuuuaaAugUGCaCGCCGa----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 68692 0.68 0.985526
Target:  5'- uGGggGccg-GCGCGgacgacgGCGGCgccgGCCCu -3'
miRNA:   3'- -CCuuUuaaaUGUGCa------CGCCGa---CGGGc -5'
23562 5' -49.5 NC_005261.1 + 74868 0.73 0.882303
Target:  5'- cGGAGGAggcggACGCGgcgGCGGCggcggagucggcgGCCCGc -3'
miRNA:   3'- -CCUUUUaaa--UGUGCa--CGCCGa------------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 127708 0.72 0.92415
Target:  5'- cGGAGGAgcUGCGCGUG-GcCUGCCUGg -3'
miRNA:   3'- -CCUUUUaaAUGUGCACgCcGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 98091 0.69 0.979357
Target:  5'- uGGAGAAUcuggggGCGCGgcggGCGGCgagGCUgGg -3'
miRNA:   3'- -CCUUUUAaa----UGUGCa---CGCCGa--CGGgC- -5'
23562 5' -49.5 NC_005261.1 + 90821 0.7 0.957721
Target:  5'- cGGGAGuaccgcgugUGCACGggggGCGGCgccGCCCc -3'
miRNA:   3'- -CCUUUuaa------AUGUGCa---CGCCGa--CGGGc -5'
23562 5' -49.5 NC_005261.1 + 67500 0.68 0.983454
Target:  5'- cGAGGAggcGCACGUGCuggacgugcucucGGCcgUGCCCGc -3'
miRNA:   3'- cCUUUUaaaUGUGCACG-------------CCG--ACGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.