miRNA display CGI


Results 61 - 80 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 87149 0.66 0.959485
Target:  5'- -gGCgagCAGGAAcaGgGCCgUGUACGCCGa -3'
miRNA:   3'- gaCG---GUCUUUuaCgCGG-ACAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 86586 0.67 0.937794
Target:  5'- -aGCCGGcgGcgGCGCCguccuugGCGUCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGaca----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 86488 0.67 0.927365
Target:  5'- -gGCCGGGccg-GCGCCUGUcuGCGgCa -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACA--UGCgGc -5'
23564 5' -53.2 NC_005261.1 + 85711 0.67 0.921768
Target:  5'- gCUGCCcgcAGAAGAUGCcgugGCaCUGgcugaGCGCCa -3'
miRNA:   3'- -GACGG---UCUUUUACG----CG-GACa----UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 84669 0.67 0.921768
Target:  5'- -gGCCGcu-AGUGCGCCUGg--GCCGc -3'
miRNA:   3'- gaCGGUcuuUUACGCGGACaugCGGC- -5'
23564 5' -53.2 NC_005261.1 + 84226 0.78 0.417555
Target:  5'- -cGCUcGcgGcgGCGCCUGUGCGCCGc -3'
miRNA:   3'- gaCGGuCuuUuaCGCGGACAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 83730 0.76 0.513396
Target:  5'- -cGCCGGAGg--GCGCCUGcguuUGCGCCu -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGAC----AUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 83031 0.71 0.790687
Target:  5'- -cGCCGGAucc-GCGCUacgccGUGCGCCGa -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGa----CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 81443 0.68 0.882911
Target:  5'- gCUGCCGGAAgugggcaaccGcgGCGUCUGagaAgGCCGg -3'
miRNA:   3'- -GACGGUCUU----------UuaCGCGGACa--UgCGGC- -5'
23564 5' -53.2 NC_005261.1 + 80881 0.68 0.909813
Target:  5'- -cGCgGGGAGGUcGUGCCgGUgaacgGCGCCGg -3'
miRNA:   3'- gaCGgUCUUUUA-CGCGGaCA-----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 80673 0.73 0.649799
Target:  5'- -cGCCGGAGccgggcgcgugcgacGUGUGCCcGUGCGCCGc -3'
miRNA:   3'- gaCGGUCUUu--------------UACGCGGaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 80617 0.67 0.932707
Target:  5'- --cCCGGAGGGcUGCGCggcGUGCGCCGc -3'
miRNA:   3'- gacGGUCUUUU-ACGCGga-CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 79105 0.69 0.875582
Target:  5'- gCUGCggaggCGGGAGAUGUaCCgGUACGCCa -3'
miRNA:   3'- -GACG-----GUCUUUUACGcGGaCAUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 78809 0.71 0.761848
Target:  5'- cCUGCCGGGccgcgcGAcaGCGCCg--GCGCCGg -3'
miRNA:   3'- -GACGGUCU------UUuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 78244 0.66 0.955637
Target:  5'- gCUGCCcGAGGGUGCGgaCg--GCGCCu -3'
miRNA:   3'- -GACGGuCUUUUACGCg-GacaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 77624 0.68 0.903457
Target:  5'- -aGCCAGAucaugGC-CCUGgccgGCGCCa -3'
miRNA:   3'- gaCGGUCUuuua-CGcGGACa---UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 77540 0.67 0.936797
Target:  5'- aUGCCGGGcugguAcgGCGCCgccgccagugGCGCCGc -3'
miRNA:   3'- gACGGUCUu----UuaCGCGGaca-------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 77075 0.66 0.947212
Target:  5'- -gGCCGucGAGGcgGCGCCgGUGCacgGCCa -3'
miRNA:   3'- gaCGGU--CUUUuaCGCGGaCAUG---CGGc -5'
23564 5' -53.2 NC_005261.1 + 76989 0.67 0.937297
Target:  5'- -gGCCAGcGAGUcgagcucGCGCCga-ACGCCGa -3'
miRNA:   3'- gaCGGUCuUUUA-------CGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 76709 0.68 0.915917
Target:  5'- uUGCCGGAGAAggcccGgGCCU---CGCCGg -3'
miRNA:   3'- gACGGUCUUUUa----CgCGGAcauGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.