miRNA display CGI


Results 61 - 80 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 86488 0.67 0.927365
Target:  5'- -gGCCGGGccg-GCGCCUGUcuGCGgCa -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACA--UGCgGc -5'
23564 5' -53.2 NC_005261.1 + 109449 0.68 0.918288
Target:  5'- -cGCCAGAGAGgcaacccccgcuucGCGCgUGcGCGCCc -3'
miRNA:   3'- gaCGGUCUUUUa-------------CGCGgACaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 66722 0.66 0.959485
Target:  5'- -cGCCGGuuGAUGCGCUucaccauguaguUGUGCacggGCUGg -3'
miRNA:   3'- gaCGGUCuuUUACGCGG------------ACAUG----CGGC- -5'
23564 5' -53.2 NC_005261.1 + 44862 0.66 0.955637
Target:  5'- -cGCgAGGAAGaGCGCCgccgcGaGCGCCGc -3'
miRNA:   3'- gaCGgUCUUUUaCGCGGa----CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 93674 0.66 0.951547
Target:  5'- -cGCgGGcgGcgGCGCCggcgGgGCGCCGg -3'
miRNA:   3'- gaCGgUCuuUuaCGCGGa---CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 22656 0.66 0.951547
Target:  5'- -cGCUGGcg---GCGCCUGggcgGCGCCc -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGACa---UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 127630 0.67 0.942629
Target:  5'- -gGCCGGAcgcGAcgGCGgCg--GCGCCGg -3'
miRNA:   3'- gaCGGUCU---UUuaCGCgGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 5267 0.67 0.937794
Target:  5'- -cGCCGGGAGAcGCcauggccgGCCgcgGUGCGCgCGg -3'
miRNA:   3'- gaCGGUCUUUUaCG--------CGGa--CAUGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 70100 0.67 0.932707
Target:  5'- -cGCCGgcGAGAAgcucgGCGCCUcGUGC-CCGg -3'
miRNA:   3'- gaCGGU--CUUUUa----CGCGGA-CAUGcGGC- -5'
23564 5' -53.2 NC_005261.1 + 3731 0.67 0.932707
Target:  5'- gCUGCCGGAcgcgccGGcgGCGCacc-GCGCCGc -3'
miRNA:   3'- -GACGGUCU------UUuaCGCGgacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 62563 0.7 0.809169
Target:  5'- -cGCCAGc--AUGCGCCccgGCGCCa -3'
miRNA:   3'- gaCGGUCuuuUACGCGGacaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 59068 0.7 0.826968
Target:  5'- -gGCCgcGGAGAGcGCGCgCggGUGCGCCGc -3'
miRNA:   3'- gaCGG--UCUUUUaCGCG-Ga-CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 22723 0.68 0.909813
Target:  5'- -aGCCGGAGGAccaGCGCCaGUcggGCGCgGg -3'
miRNA:   3'- gaCGGUCUUUUa--CGCGGaCA---UGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 77624 0.68 0.903457
Target:  5'- -aGCCAGAucaugGC-CCUGgccgGCGCCa -3'
miRNA:   3'- gaCGGUCUuuua-CGcGGACa---UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 43431 0.68 0.896853
Target:  5'- -cGCCGgcGggGAgcuggcucgGCGCCUGgacguCGCCGg -3'
miRNA:   3'- gaCGGU--CuuUUa--------CGCGGACau---GCGGC- -5'
23564 5' -53.2 NC_005261.1 + 3843 0.68 0.896853
Target:  5'- gCUGgCGGcAGcgGCGCCg--GCGCCGc -3'
miRNA:   3'- -GACgGUCuUUuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 12124 0.68 0.890002
Target:  5'- -cGCCAGGAug-GCGCCcgc-CGCCGc -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 54879 0.68 0.882911
Target:  5'- -gGCCGGAuGAUGCGUCgGcGCGCgCGu -3'
miRNA:   3'- gaCGGUCUuUUACGCGGaCaUGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 102825 0.69 0.860235
Target:  5'- -cGCCGGuc--UGCGCCUc-GCGCCGc -3'
miRNA:   3'- gaCGGUCuuuuACGCGGAcaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 21261 0.69 0.844011
Target:  5'- gUGCCGcaacgagcacGAGGAcG-GCCUGUACGCCa -3'
miRNA:   3'- gACGGU----------CUUUUaCgCGGACAUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.