miRNA display CGI


Results 41 - 60 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 27469 0.75 0.383684
Target:  5'- cGCGggGCGGGCAgGCCCUccccggGCGCacCUGg -3'
miRNA:   3'- uCGCuuUGCUUGUgCGGGA------CGCG--GAC- -5'
23565 3' -56.1 NC_005261.1 + 76168 0.75 0.40937
Target:  5'- cGCGAGGCgGGGCA-GCUgCUGCGCCUGg -3'
miRNA:   3'- uCGCUUUG-CUUGUgCGG-GACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 80251 0.75 0.383684
Target:  5'- uGGCGgcGCGGccGCGCGCgCCUGCGUCg- -3'
miRNA:   3'- -UCGCuuUGCU--UGUGCG-GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 131986 0.75 0.383684
Target:  5'- cGCGggGCGGGCAgGCCCUccccggGCGCacCUGg -3'
miRNA:   3'- uCGCuuUGCUUGUgCGGGA------CGCG--GAC- -5'
23565 3' -56.1 NC_005261.1 + 37245 0.75 0.392126
Target:  5'- uGGCGGAGCGcggcGACGCGCUggGCGCCUu -3'
miRNA:   3'- -UCGCUUUGC----UUGUGCGGgaCGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 31198 0.75 0.418168
Target:  5'- cGCGgcGCGuGGCGCGCCCUGCuCCUu -3'
miRNA:   3'- uCGCuuUGC-UUGUGCGGGACGcGGAc -5'
23565 3' -56.1 NC_005261.1 + 4118 0.75 0.392126
Target:  5'- aGGCGGAagucggcgGCGAGCGCGCgCCggcGCGCCg- -3'
miRNA:   3'- -UCGCUU--------UGCUUGUGCG-GGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 33680 0.75 0.400689
Target:  5'- gGGCGAccuGGCGGACGC-CaagCUGCGCCUGg -3'
miRNA:   3'- -UCGCU---UUGCUUGUGcGg--GACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 49073 0.74 0.454472
Target:  5'- cGCGAAGCGGGCACGCgCCgcGgGCCc- -3'
miRNA:   3'- uCGCUUUGCUUGUGCG-GGa-CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 5869 0.74 0.427079
Target:  5'- gAGCGcgGCGAGCGCGCCgcggcggaagCUGCGCaUGg -3'
miRNA:   3'- -UCGCuuUGCUUGUGCGG----------GACGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 75925 0.74 0.445234
Target:  5'- cGCGggGCcgccGCGCGCCCgcgcgGCGCCg- -3'
miRNA:   3'- uCGCuuUGcu--UGUGCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 102764 0.74 0.436102
Target:  5'- cGCGGAcGCGAGCGCGCCCgagGCCUc -3'
miRNA:   3'- uCGCUU-UGCUUGUGCGGGacgCGGAc -5'
23565 3' -56.1 NC_005261.1 + 17567 0.74 0.445234
Target:  5'- cGCGAGAUcacaGGCGCGCCC-GCGCCUu -3'
miRNA:   3'- uCGCUUUGc---UUGUGCGGGaCGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 29926 0.74 0.445234
Target:  5'- cGCGAGcugGCGGACGCuGCgCUGCgGCCUGc -3'
miRNA:   3'- uCGCUU---UGCUUGUG-CGgGACG-CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 33208 0.74 0.445234
Target:  5'- gAGCGGGAgaGGACAcCGCCCUgGCGCCc- -3'
miRNA:   3'- -UCGCUUUg-CUUGU-GCGGGA-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 71323 0.73 0.501156
Target:  5'- cGCGAGcacguagccggccGCGAGCGCGUCCUcggugaGCGCCg- -3'
miRNA:   3'- uCGCUU-------------UGCUUGUGCGGGA------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 94818 0.73 0.482789
Target:  5'- cGGCG--GCGGAgGcCGCCCccgGCGCCUGg -3'
miRNA:   3'- -UCGCuuUGCUUgU-GCGGGa--CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 64271 0.73 0.482789
Target:  5'- cAGaCGGccCGGGCGCGCCCcGCGUCUGc -3'
miRNA:   3'- -UC-GCUuuGCUUGUGCGGGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 54238 0.73 0.492416
Target:  5'- cGCGgcGCGcgcucaugugcAGCGCGCCCUGgCGCCg- -3'
miRNA:   3'- uCGCuuUGC-----------UUGUGCGGGAC-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 94584 0.73 0.492416
Target:  5'- gGGCGc--CGAACGCGCCCUcCGCCc- -3'
miRNA:   3'- -UCGCuuuGCUUGUGCGGGAcGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.