miRNA display CGI


Results 41 - 60 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 116521 0.66 0.868513
Target:  5'- cGGCGgcGCGAGgcccgccgcucCGCGCCCgcgcGCGUCa- -3'
miRNA:   3'- -UCGCuuUGCUU-----------GUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 29298 0.66 0.883065
Target:  5'- cGGCGAGGC---CugGCCCggcagcGCGCCg- -3'
miRNA:   3'- -UCGCUUUGcuuGugCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 60347 0.66 0.890003
Target:  5'- cGGCGccGCGGccGCGCGCCaggcaGUGCUUGg -3'
miRNA:   3'- -UCGCuuUGCU--UGUGCGGga---CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 117478 0.66 0.873707
Target:  5'- cGGCGAcGCGcuGCugcgcuucuaccuuGCGCCCgccgGCGCCg- -3'
miRNA:   3'- -UCGCUuUGCu-UG--------------UGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 65825 0.66 0.890003
Target:  5'- cGGCGgcGCGAAgcUGCCCgaGUGCCg- -3'
miRNA:   3'- -UCGCuuUGCUUguGCGGGa-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 21869 0.66 0.860909
Target:  5'- cGCGcucGCGAacGCGCGCCCgcgGgGCCc- -3'
miRNA:   3'- uCGCuu-UGCU--UGUGCGGGa--CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 133658 0.66 0.890003
Target:  5'- gAGCGcuGCGuGCuCGCCUccgGCGCCa- -3'
miRNA:   3'- -UCGCuuUGCuUGuGCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 72978 0.66 0.860909
Target:  5'- cGCGGGgguccGCGAGCGCGgCCaGCGCg-- -3'
miRNA:   3'- uCGCUU-----UGCUUGUGCgGGaCGCGgac -5'
23565 3' -56.1 NC_005261.1 + 104221 0.66 0.860909
Target:  5'- cGCGcgGCGcGCACcguGCCCUccaGCGCCa- -3'
miRNA:   3'- uCGCuuUGCuUGUG---CGGGA---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 103722 0.66 0.863976
Target:  5'- cGGCGucuagcuccuucuuGGCGGcgGCGCCCUcCGCCUGc -3'
miRNA:   3'- -UCGCu-------------UUGCUugUGCGGGAcGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 115339 0.66 0.867009
Target:  5'- -cCGGGACGuguacuucaugcGCACGCUgUGCGCCUc -3'
miRNA:   3'- ucGCUUUGCu-----------UGUGCGGgACGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 76876 0.66 0.868513
Target:  5'- cGGCGAGGaggcCGAcgGCACGCUCUuCGCCc- -3'
miRNA:   3'- -UCGCUUU----GCU--UGUGCGGGAcGCGGac -5'
23565 3' -56.1 NC_005261.1 + 97207 0.66 0.868513
Target:  5'- aAGCGccGCGGcCACGCUCggagGCGCUg- -3'
miRNA:   3'- -UCGCuuUGCUuGUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 39941 0.66 0.8759
Target:  5'- aAGgGGAccGCGAACACggaGCCCUcGCGCa-- -3'
miRNA:   3'- -UCgCUU--UGCUUGUG---CGGGA-CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 69384 0.66 0.8759
Target:  5'- -uCGAGAUGAccGC-CGUCCUGaGCCUGg -3'
miRNA:   3'- ucGCUUUGCU--UGuGCGGGACgCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 57543 0.66 0.8759
Target:  5'- cGGCGc-ACGGgcacacgucgcACGCGCCCggcuccgGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCU-----------UGUGCGGGa------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 130219 0.66 0.8759
Target:  5'- aGGCGGAA-GAGCGuCgGCCCgcucagGCGCCg- -3'
miRNA:   3'- -UCGCUUUgCUUGU-G-CGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 36593 0.66 0.883065
Target:  5'- cGGCcaccgGggGgGGGCAgCGCuCCUGCGCCc- -3'
miRNA:   3'- -UCG-----CuuUgCUUGU-GCG-GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 79032 0.66 0.883065
Target:  5'- -cCGggGCGccCGCGCCCUugGCGUCg- -3'
miRNA:   3'- ucGCuuUGCuuGUGCGGGA--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 51371 0.66 0.890003
Target:  5'- cGCGGAguACGcGCAgGCCgUGCGCg-- -3'
miRNA:   3'- uCGCUU--UGCuUGUgCGGgACGCGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.