Results 1 - 20 of 813 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 59208 | 0.66 | 0.85256 |
Target: 5'- cGCGGGCGCCccgggcgaggaggggGAGgaGGAgUUUGaCGCGg -3' miRNA: 3'- aCGUCCGCGG---------------UUC--UCUgAAGC-GCGCg -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 86291 | 0.66 | 0.850186 |
Target: 5'- cGguGGCGCCGGcgacgagcGGGACcaggccgcggccgcUGCGCGCc -3' miRNA: 3'- aCguCCGCGGUU--------CUCUGaa------------GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 117541 | 0.66 | 0.849391 |
Target: 5'- cGC-GGCGCCgGAGGGGCUgacCGUGUu -3' miRNA: 3'- aCGuCCGCGG-UUCUCUGAagcGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 60413 | 0.66 | 0.849391 |
Target: 5'- cGguGGUGCUggGGcGGCagcucggCGgGCGCg -3' miRNA: 3'- aCguCCGCGGuuCU-CUGaa-----GCgCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 32332 | 0.66 | 0.849391 |
Target: 5'- aGCGGcccGCGCCcGGAGAUgugcUCGauCGUGCa -3' miRNA: 3'- aCGUC---CGCGGuUCUCUGa---AGC--GCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 93995 | 0.66 | 0.849391 |
Target: 5'- gGCcGcGCGCUggGcGGCcagcagCGCGCGCu -3' miRNA: 3'- aCGuC-CGCGGuuCuCUGaa----GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 43360 | 0.66 | 0.849391 |
Target: 5'- cGCGGGcCGCCcgcccGGGC--CGUGCGCg -3' miRNA: 3'- aCGUCC-GCGGuuc--UCUGaaGCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 76009 | 0.66 | 0.849391 |
Target: 5'- cGCgaGGGCGC--AGAcGCggcCGCGCGCa -3' miRNA: 3'- aCG--UCCGCGguUCUcUGaa-GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 123099 | 0.66 | 0.849391 |
Target: 5'- gGCGGGgGCgAAG-GAg-UCGCGaCGCc -3' miRNA: 3'- aCGUCCgCGgUUCuCUgaAGCGC-GCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 44585 | 0.66 | 0.849391 |
Target: 5'- gGUGGGCGUacgcGGACcUCGCGCuGCu -3' miRNA: 3'- aCGUCCGCGguucUCUGaAGCGCG-CG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 49379 | 0.66 | 0.849391 |
Target: 5'- cGCgAGGCGCggccCAGGuagccgacgccGGGCcggCGCGCGCc -3' miRNA: 3'- aCG-UCCGCG----GUUC-----------UCUGaa-GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 86595 | 0.66 | 0.849391 |
Target: 5'- gGCGGGC-CCGGGcAGcACUU-GCGUGUa -3' miRNA: 3'- aCGUCCGcGGUUC-UC-UGAAgCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 58996 | 0.66 | 0.849391 |
Target: 5'- gUGCuGGGCGCCGc-GGGCgcCGCGCu- -3' miRNA: 3'- -ACG-UCCGCGGUucUCUGaaGCGCGcg -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 83067 | 0.66 | 0.849391 |
Target: 5'- cGCgAGcCGCCGgcGGcGGCgcUCGCGCGCg -3' miRNA: 3'- aCG-UCcGCGGU--UCuCUGa-AGCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 15554 | 0.66 | 0.849391 |
Target: 5'- aGCAGGCGCagcuGAcGAacgugaugcuCUUCGCGCcCa -3' miRNA: 3'- aCGUCCGCGguu-CU-CU----------GAAGCGCGcG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 82275 | 0.66 | 0.849391 |
Target: 5'- cGCGggagacccGGCGCCGGGGagccaaacGGCU--GCGCGCc -3' miRNA: 3'- aCGU--------CCGCGGUUCU--------CUGAagCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 106418 | 0.66 | 0.849391 |
Target: 5'- aGCGcGCGCCGcucAGGCca-GCGCGCg -3' miRNA: 3'- aCGUcCGCGGUuc-UCUGaagCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 63976 | 0.66 | 0.849391 |
Target: 5'- cGCGcGCGCgAAuGGGACguacUCGgCGCGCc -3' miRNA: 3'- aCGUcCGCGgUU-CUCUGa---AGC-GCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 41488 | 0.66 | 0.849391 |
Target: 5'- cGC-GGC-CCAGGccgGGAC-UCGCGcCGCg -3' miRNA: 3'- aCGuCCGcGGUUC---UCUGaAGCGC-GCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 49447 | 0.66 | 0.849391 |
Target: 5'- cUGCGcGGCGCCGGcggccagggccGAGGag-CGCaGCGCc -3' miRNA: 3'- -ACGU-CCGCGGUU-----------CUCUgaaGCG-CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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