miRNA display CGI


Results 1 - 20 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 117541 0.66 0.849391
Target:  5'- cGC-GGCGCCgGAGGGGCUgacCGUGUu -3'
miRNA:   3'- aCGuCCGCGG-UUCUCUGAagcGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 113017 0.66 0.841332
Target:  5'- gGCGGGCaguaccCCAcAGAG-CgggcCGCGCGCg -3'
miRNA:   3'- aCGUCCGc-----GGU-UCUCuGaa--GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 68762 0.66 0.841332
Target:  5'- --gGGGCGCCGcGGAGccgccgugucgaACUUCGUGCa- -3'
miRNA:   3'- acgUCCGCGGU-UCUC------------UGAAGCGCGcg -5'
23565 5' -57.2 NC_005261.1 + 126402 1.11 0.001447
Target:  5'- gUGCAGGCGCCAAGAGACUUCGCGCGCc -3'
miRNA:   3'- -ACGUCCGCGGUUCUCUGAAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 1901 0.66 0.849391
Target:  5'- aGCGcGCGCCGcucAGGCca-GCGCGCg -3'
miRNA:   3'- aCGUcCGCGGUuc-UCUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 94912 0.66 0.849391
Target:  5'- cUGgAGGCGaggaAGGAGcGCUUCGCGaCGg -3'
miRNA:   3'- -ACgUCCGCgg--UUCUC-UGAAGCGC-GCg -5'
23565 5' -57.2 NC_005261.1 + 83147 0.66 0.848594
Target:  5'- cUGCAGGUGCggCAGGuacuGGCUcacgucgcagagcUCGgUGCGCa -3'
miRNA:   3'- -ACGUCCGCG--GUUCu---CUGA-------------AGC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 2652 0.66 0.848594
Target:  5'- gGCGGGCagcggcggcucccGCCGcgcuGGGGACccggCGgCGCGCc -3'
miRNA:   3'- aCGUCCG-------------CGGU----UCUCUGaa--GC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 82294 0.66 0.841332
Target:  5'- aUGCA-GCGCCc-GAGGCUguccaUCGaGCGCu -3'
miRNA:   3'- -ACGUcCGCGGuuCUCUGA-----AGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 119190 0.66 0.841332
Target:  5'- cGCcGGa-CCGAGAGuCUacCGCGCGCc -3'
miRNA:   3'- aCGuCCgcGGUUCUCuGAa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 3922 0.66 0.841332
Target:  5'- cGCcGGCGCCGgccuccggguaGGccauGGGCgcguaCGCGCGCc -3'
miRNA:   3'- aCGuCCGCGGU-----------UC----UCUGaa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 67373 0.66 0.841332
Target:  5'- gGCAGcGCcaccGCCGcGaAGACcgcCGCGCGCg -3'
miRNA:   3'- aCGUC-CG----CGGUuC-UCUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 74514 0.66 0.849391
Target:  5'- gGC-GGCGCCGGGGccauGGCgcUUGgGCGCc -3'
miRNA:   3'- aCGuCCGCGGUUCU----CUGa-AGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 136248 0.66 0.841332
Target:  5'- gGCAGaGgGCCGAGAGAaggCaCGCGa -3'
miRNA:   3'- aCGUC-CgCGGUUCUCUgaaGcGCGCg -5'
23565 5' -57.2 NC_005261.1 + 71950 0.66 0.849391
Target:  5'- cGCcccacuGGCGUCGGcgcGGGGCgcggaGCGCGCg -3'
miRNA:   3'- aCGu-----CCGCGGUU---CUCUGaag--CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 11099 0.66 0.846994
Target:  5'- gGCGGGaCGCgAcGGGACgagaugcgccggcagCGUGCGCc -3'
miRNA:   3'- aCGUCC-GCGgUuCUCUGaa-------------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 126700 0.66 0.841332
Target:  5'- gGCGGuGCGggAAGcGGCUgguUCGCGUGCg -3'
miRNA:   3'- aCGUC-CGCggUUCuCUGA---AGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 106804 0.66 0.841332
Target:  5'- cGCAccaGCGCCGAGuGGCccgccagcaGCGCGUg -3'
miRNA:   3'- aCGUc--CGCGGUUCuCUGaag------CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 60843 0.66 0.849391
Target:  5'- gGC-GGCGgCGAGG----UCGCGCGCc -3'
miRNA:   3'- aCGuCCGCgGUUCUcugaAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 111607 0.66 0.849391
Target:  5'- aGUGGGCGCgGcuGGGCUgcggCGcCGUGCc -3'
miRNA:   3'- aCGUCCGCGgUucUCUGAa---GC-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.