miRNA display CGI


Results 21 - 40 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 13298 0.66 0.841332
Target:  5'- cGCAGGUGUgCGacGGGGGCcUCGUaCGCa -3'
miRNA:   3'- aCGUCCGCG-GU--UCUCUGaAGCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 68762 0.66 0.841332
Target:  5'- --gGGGCGCCGcGGAGccgccgugucgaACUUCGUGCa- -3'
miRNA:   3'- acgUCCGCGGU-UCUC------------UGAAGCGCGcg -5'
23565 5' -57.2 NC_005261.1 + 67373 0.66 0.841332
Target:  5'- gGCAGcGCcaccGCCGcGaAGACcgcCGCGCGCg -3'
miRNA:   3'- aCGUC-CG----CGGUuC-UCUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 60843 0.66 0.849391
Target:  5'- gGC-GGCGgCGAGG----UCGCGCGCc -3'
miRNA:   3'- aCGuCCGCgGUUCUcugaAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 88032 0.66 0.833082
Target:  5'- gGC-GGUGCCuGGGGGCgguccagUCaCGCGCc -3'
miRNA:   3'- aCGuCCGCGGuUCUCUGa------AGcGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 130238 0.66 0.838877
Target:  5'- cGCucAGGCGCCGcgccAGcggcucguacugcgGGGCguccCGCGCGCc -3'
miRNA:   3'- aCG--UCCGCGGU----UC--------------UCUGaa--GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 113017 0.66 0.841332
Target:  5'- gGCGGGCaguaccCCAcAGAG-CgggcCGCGCGCg -3'
miRNA:   3'- aCGUCCGc-----GGU-UCUCuGaa--GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 71950 0.66 0.849391
Target:  5'- cGCcccacuGGCGUCGGcgcGGGGCgcggaGCGCGCg -3'
miRNA:   3'- aCGu-----CCGCGGUU---CUCUGaag--CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 49356 0.66 0.840515
Target:  5'- aGCAGcGCGUgGAggauguuGAGGCUgUCGCucGCGCu -3'
miRNA:   3'- aCGUC-CGCGgUU-------CUCUGA-AGCG--CGCG- -5'
23565 5' -57.2 NC_005261.1 + 74514 0.66 0.849391
Target:  5'- gGC-GGCGCCGGGGccauGGCgcUUGgGCGCc -3'
miRNA:   3'- aCGuCCGCGGUUCU----CUGa-AGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 106804 0.66 0.841332
Target:  5'- cGCAccaGCGCCGAGuGGCccgccagcaGCGCGUg -3'
miRNA:   3'- aCGUc--CGCGGUUCuCUGaag------CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 125743 0.66 0.841332
Target:  5'- cGCaaGGGgGCCGGGgccaGGGCUgcCGCGgGCu -3'
miRNA:   3'- aCG--UCCgCGGUUC----UCUGAa-GCGCgCG- -5'
23565 5' -57.2 NC_005261.1 + 136248 0.66 0.841332
Target:  5'- gGCAGaGgGCCGAGAGAaggCaCGCGa -3'
miRNA:   3'- aCGUC-CgCGGUUCUCUgaaGcGCGCg -5'
23565 5' -57.2 NC_005261.1 + 82294 0.66 0.841332
Target:  5'- aUGCA-GCGCCc-GAGGCUguccaUCGaGCGCu -3'
miRNA:   3'- -ACGUcCGCGGuuCUCUGA-----AGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 83147 0.66 0.848594
Target:  5'- cUGCAGGUGCggCAGGuacuGGCUcacgucgcagagcUCGgUGCGCa -3'
miRNA:   3'- -ACGUCCGCG--GUUCu---CUGA-------------AGC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 1901 0.66 0.849391
Target:  5'- aGCGcGCGCCGcucAGGCca-GCGCGCg -3'
miRNA:   3'- aCGUcCGCGGUuc-UCUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 101317 0.66 0.833082
Target:  5'- aGCGGGUGCgAGucGAUgauagaGCGCGCc -3'
miRNA:   3'- aCGUCCGCGgUUcuCUGaag---CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 83655 0.66 0.833082
Target:  5'- aGC-GGCGU---GAGGCggaCGCGCGCc -3'
miRNA:   3'- aCGuCCGCGguuCUCUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 103278 0.66 0.833082
Target:  5'- -cCAGcGCGCCGGGuGc---CGCGCGCa -3'
miRNA:   3'- acGUC-CGCGGUUCuCugaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 135132 0.66 0.833082
Target:  5'- cGCAGcGCGgCGggGGAGACgaCGC-CGCc -3'
miRNA:   3'- aCGUC-CGCgGU--UCUCUGaaGCGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.