miRNA display CGI


Results 41 - 60 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 42485 0.76 0.136805
Target:  5'- cGCCCCCGgcggcggcggcgGCGCCGCUGaGCgCGGCg- -3'
miRNA:   3'- -CGGGGGCa-----------UGUGGCGACgCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 101399 0.77 0.109901
Target:  5'- aGCCCCCGggcgccgGCACCGCauaccggggcacguaGCGCCGGCc- -3'
miRNA:   3'- -CGGGGGCa------UGUGGCGa--------------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 40404 0.78 0.101572
Target:  5'- cGCCCCCGUuuuUGCCGCcgucugcggggGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCAu--GUGGCGa----------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 93974 0.8 0.072726
Target:  5'- cCCCCCGcGCGCCGCgGCGUCGGCc- -3'
miRNA:   3'- cGGGGGCaUGUGGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 49425 0.81 0.062233
Target:  5'- cGCCCCCGccgccggcguccUGCugCGCgGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGC------------AUGugGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 7979 0.75 0.159543
Target:  5'- cGCCCCCaGUACgaGCCGCUG-GCgCGGCg- -3'
miRNA:   3'- -CGGGGG-CAUG--UGGCGACgCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 8508 0.75 0.159543
Target:  5'- cGCCCCU----GCCGCUGCaGCCGGCg- -3'
miRNA:   3'- -CGGGGGcaugUGGCGACG-CGGCCGau -5'
23566 3' -63 NC_005261.1 + 70003 0.73 0.20786
Target:  5'- cGCCCCCGccgucaggguCGCCGUUgucggccGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCau--------GUGGCGA-------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 44768 0.73 0.203433
Target:  5'- cGCgCCCCG-GCACCGCgcugGgGCCGGUg- -3'
miRNA:   3'- -CG-GGGGCaUGUGGCGa---CgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 85205 0.74 0.198611
Target:  5'- -gCCCCG-GCGCCGCggaaGCGCUGGCg- -3'
miRNA:   3'- cgGGGGCaUGUGGCGa---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 126156 0.74 0.193889
Target:  5'- cGCCCCgGcgcggACGCCGCUGCcgcaccGCCGGUa- -3'
miRNA:   3'- -CGGGGgCa----UGUGGCGACG------CGGCCGau -5'
23566 3' -63 NC_005261.1 + 85253 0.74 0.189265
Target:  5'- cGCCCCCGccugccgGCGCCGCaccgGCGCgGcGCUGc -3'
miRNA:   3'- -CGGGGGCa------UGUGGCGa---CGCGgC-CGAU- -5'
23566 3' -63 NC_005261.1 + 57340 0.74 0.180308
Target:  5'- aCCCCUGggagGCGCCGCUGaagccCGCgCGGCUGa -3'
miRNA:   3'- cGGGGGCa---UGUGGCGAC-----GCG-GCCGAU- -5'
23566 3' -63 NC_005261.1 + 78776 0.74 0.175972
Target:  5'- cCCCCCG-ACGCCGCggccgcgcUGCuGCCGGCg- -3'
miRNA:   3'- cGGGGGCaUGUGGCG--------ACG-CGGCCGau -5'
23566 3' -63 NC_005261.1 + 17058 0.75 0.171728
Target:  5'- cGgCCCCGUGCACCGa-GCGCCcgGGCa- -3'
miRNA:   3'- -CgGGGGCAUGUGGCgaCGCGG--CCGau -5'
23566 3' -63 NC_005261.1 + 135850 0.75 0.167577
Target:  5'- cGCCgCCaGcGCGCCGCUGCGgCGGCg- -3'
miRNA:   3'- -CGGgGG-CaUGUGGCGACGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 102536 0.75 0.167577
Target:  5'- aGCCCCCGgccCACCGggGCucGCCGGCg- -3'
miRNA:   3'- -CGGGGGCau-GUGGCgaCG--CGGCCGau -5'
23566 3' -63 NC_005261.1 + 136824 0.75 0.163515
Target:  5'- cGCCCCCGccgcCGCCGCggccgcgGCGCcCGGCg- -3'
miRNA:   3'- -CGGGGGCau--GUGGCGa------CGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 48151 0.75 0.163515
Target:  5'- gGCCCCCGUcgcugcccucgGCGcCCGCgggGCGCCgcuGGCUGu -3'
miRNA:   3'- -CGGGGGCA-----------UGU-GGCGa--CGCGG---CCGAU- -5'
23566 3' -63 NC_005261.1 + 31558 0.75 0.163515
Target:  5'- gGCCCUCGgGCGCgCGCUggacgaccGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCaUGUG-GCGA--------CGCGGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.