miRNA display CGI


Results 61 - 80 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 131866 0.67 0.364534
Target:  5'- gCGGcuGCUUGagCugGcGGCCGCcGCCGCAc -3'
miRNA:   3'- -GCC--CGAGCg-GugC-CCGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 131774 0.74 0.117834
Target:  5'- gCGGGCgCGCCGCuGGGCCcCGacGCCGCGc -3'
miRNA:   3'- -GCCCGaGCGGUG-CCCGGcGU--CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 131197 0.67 0.387692
Target:  5'- gCGGcGCggUCGCCGCcGGCgCGCccgcguacguGGCCGCGc -3'
miRNA:   3'- -GCC-CG--AGCGGUGcCCG-GCG----------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 131157 0.72 0.161658
Target:  5'- gCGGcGCUCGCCGCcuucugcuGCCGCAGCgGCu -3'
miRNA:   3'- -GCC-CGAGCGGUGcc------CGGCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 131078 0.66 0.403659
Target:  5'- gCGGGacugcCUgGCCACGuacGCCGUcGCCGCGc -3'
miRNA:   3'- -GCCC-----GAgCGGUGCc--CGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 130472 0.66 0.395624
Target:  5'- aGcGGCUCGCgGCGuGCCuCGGCgGCGa -3'
miRNA:   3'- gC-CCGAGCGgUGCcCGGcGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 129713 0.66 0.420037
Target:  5'- gGaGGCagGcCCGCcGGCUGCAGCgGCAg -3'
miRNA:   3'- gC-CCGagC-GGUGcCCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 129681 0.73 0.157822
Target:  5'- gGGGCgUCGCgAcuCGGGCCGgGGCCGgGg -3'
miRNA:   3'- gCCCG-AGCGgU--GCCCGGCgUCGGCgU- -5'
23567 5' -66.4 NC_005261.1 + 129539 0.71 0.201053
Target:  5'- gCGGGCUaCGCCgcaaggugcaagacgGCGGGCguagaggaggagGCGGCCGCGc -3'
miRNA:   3'- -GCCCGA-GCGG---------------UGCCCGg-----------CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 129421 0.68 0.321155
Target:  5'- gCGGGCgccccuucaaGCCcuCGgcGGCUGCAGCCGCc -3'
miRNA:   3'- -GCCCGag--------CGGu-GC--CCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 128802 0.7 0.246291
Target:  5'- cCGGGCcCGCgGCgGGGCuCGC-GCUGCGg -3'
miRNA:   3'- -GCCCGaGCGgUG-CCCG-GCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 128391 0.72 0.173262
Target:  5'- gCGGGCUUGCCccggGCGGGCCgGCuagggugGGCuCGCu -3'
miRNA:   3'- -GCCCGAGCGG----UGCCCGG-CG-------UCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 128334 0.71 0.190483
Target:  5'- gCGGGCUUGCCccggGCGGGCCgGCuagggugGGCuCGCc -3'
miRNA:   3'- -GCCCGAGCGG----UGCCCGG-CG-------UCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 128277 0.71 0.190483
Target:  5'- gCGGGCUUGCCccggGCGGGCCgGCuagggugGGCuCGCc -3'
miRNA:   3'- -GCCCGAGCGG----UGCCCGG-CG-------UCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 128007 0.68 0.314313
Target:  5'- gCGGGCcCGCCugggcaggcGCGGGCCcugGgAGCaCGCGg -3'
miRNA:   3'- -GCCCGaGCGG---------UGCCCGG---CgUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 127972 0.67 0.357029
Target:  5'- aGGGCagaaggCGCCA-GGcCCGCGGCgGCGa -3'
miRNA:   3'- gCCCGa-----GCGGUgCCcGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 127798 0.78 0.066277
Target:  5'- gCGGGCcggCGCCgcggcgGCGGGCCGCucgcgcucgcGGCCGCGa -3'
miRNA:   3'- -GCCCGa--GCGG------UGCCCGGCG----------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 127757 0.69 0.281757
Target:  5'- gCGGGC-CGCgGCGGGCgCGaagacgccCGGCUGCu -3'
miRNA:   3'- -GCCCGaGCGgUGCCCG-GC--------GUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 127702 0.77 0.077129
Target:  5'- gGGGCgacagcgagcgCGCCGCGGGgcCCGCAGCgGCGg -3'
miRNA:   3'- gCCCGa----------GCGGUGCCC--GGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 127664 0.69 0.26354
Target:  5'- gCGGGUUCGggGCGggacGGCgGCGGCCGCu -3'
miRNA:   3'- -GCCCGAGCggUGC----CCGgCGUCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.