miRNA display CGI


Results 61 - 80 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 44222 0.66 0.420037
Target:  5'- cCGGGagcgcgCGCUGCuGGCCGCccAGCgCGCGg -3'
miRNA:   3'- -GCCCga----GCGGUGcCCGGCG--UCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 110298 0.66 0.419208
Target:  5'- gCGGGCgccugCGCCgccgaguACGGcaaCCGCGccGCCGCGg -3'
miRNA:   3'- -GCCCGa----GCGG-------UGCCc--GGCGU--CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 109613 0.66 0.436809
Target:  5'- cCGcGCUCGCCAgCGcuauaaaggcGGCuUGCGGCCGCc -3'
miRNA:   3'- -GCcCGAGCGGU-GC----------CCG-GCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 81194 0.66 0.436809
Target:  5'- gGGGCacgGCCGCGcGGgCGCgAGCCGg- -3'
miRNA:   3'- gCCCGag-CGGUGC-CCgGCG-UCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 126467 0.66 0.436809
Target:  5'- gCGcGCUCGCCucGCGGuaguaccgcGCCGCcaccagcuGCCGCAg -3'
miRNA:   3'- -GCcCGAGCGG--UGCC---------CGGCGu-------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 29594 0.66 0.436809
Target:  5'- aGGGCU-GCCG-GGGCCaCAGCuCGUu -3'
miRNA:   3'- gCCCGAgCGGUgCCCGGcGUCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 68854 0.66 0.428375
Target:  5'- gCGGGgaCGCCcucuGCCGCGGCUGUg -3'
miRNA:   3'- -GCCCgaGCGGugccCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 3821 0.66 0.428375
Target:  5'- gCGcGCU-GCCGCGGGCC-CGGgCGCu -3'
miRNA:   3'- -GCcCGAgCGGUGCCCGGcGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 59147 0.66 0.420037
Target:  5'- -cGGCgCGCCcCGGGCgCGCGGCgccCGCc -3'
miRNA:   3'- gcCCGaGCGGuGCCCG-GCGUCG---GCGu -5'
23567 5' -66.4 NC_005261.1 + 119033 0.66 0.420037
Target:  5'- gCGGaCgUCGCCgACGGuaacgcgcCCGCGGCCGCGc -3'
miRNA:   3'- -GCCcG-AGCGG-UGCCc-------GGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 109328 0.67 0.387692
Target:  5'- gCGaGCgcgGCCGCGGGguCgGCGGCCGCGu -3'
miRNA:   3'- -GCcCGag-CGGUGCCC--GgCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 33069 0.67 0.387692
Target:  5'- cCGGGgaCGCgGCGcuGGCgGCcGCCGCc -3'
miRNA:   3'- -GCCCgaGCGgUGC--CCGgCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 106916 0.66 0.411798
Target:  5'- cCGcGGCgCGCUGCaGGGCCGcCAGCgacaCGCGc -3'
miRNA:   3'- -GC-CCGaGCGGUG-CCCGGC-GUCG----GCGU- -5'
23567 5' -66.4 NC_005261.1 + 76993 0.66 0.411798
Target:  5'- cCGGcuCUCGCCGCGcGCgCGC-GCCGCc -3'
miRNA:   3'- -GCCc-GAGCGGUGCcCG-GCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 3543 0.66 0.411798
Target:  5'- uCGGcGCgcagCGCgGCGGG-CGCGgcGCCGCu -3'
miRNA:   3'- -GCC-CGa---GCGgUGCCCgGCGU--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 131078 0.66 0.403659
Target:  5'- gCGGGacugcCUgGCCACGuacGCCGUcGCCGCGc -3'
miRNA:   3'- -GCCC-----GAgCGGUGCc--CGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 100043 0.66 0.403659
Target:  5'- gCGGGCgucaGCUcgaGCGcGCCGCcGCCGCc -3'
miRNA:   3'- -GCCCGag--CGG---UGCcCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 133030 0.66 0.395624
Target:  5'- gCGGGCgCGCCACcGcGCaCGCAcguGCUGCGc -3'
miRNA:   3'- -GCCCGaGCGGUGcC-CG-GCGU---CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 136444 0.66 0.395624
Target:  5'- gCGGGCgUCG-CAgGGGCaCGCGGCaGCc -3'
miRNA:   3'- -GCCCG-AGCgGUgCCCG-GCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 94266 0.66 0.395624
Target:  5'- aGGGCggCGCCGCGaGGCucuuggCGCAGa-GCAu -3'
miRNA:   3'- gCCCGa-GCGGUGC-CCG------GCGUCggCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.