miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 70881 0.66 0.994771
Target:  5'- cGUGGCCgGCGGugcacauGGCCGUGcacUUGcGCGc -3'
miRNA:   3'- -CAUCGGgUGCUu------UCGGUAU---AACuCGU- -5'
23570 3' -49.8 NC_005261.1 + 46701 0.66 0.994771
Target:  5'- cGUAGCCCGgGuccucGGCCAUGUccGAGa- -3'
miRNA:   3'- -CAUCGGGUgCuu---UCGGUAUAa-CUCgu -5'
23570 3' -49.8 NC_005261.1 + 124205 0.66 0.994771
Target:  5'- aUGGCCC-CGcuGGCCAUcgcaGAGCu -3'
miRNA:   3'- cAUCGGGuGCuuUCGGUAuaa-CUCGu -5'
23570 3' -49.8 NC_005261.1 + 40239 0.66 0.994771
Target:  5'- cUGGCCC--GggGGCCG---UGAGCGc -3'
miRNA:   3'- cAUCGGGugCuuUCGGUauaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 71437 0.66 0.994436
Target:  5'- -gGGCCCGCGGcgcgcAGCCGccgccucccgGAGCAu -3'
miRNA:   3'- caUCGGGUGCUu----UCGGUauaa------CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 29705 0.66 0.993901
Target:  5'- -cGGCCUGCGu-GGCCA---UGAGCc -3'
miRNA:   3'- caUCGGGUGCuuUCGGUauaACUCGu -5'
23570 3' -49.8 NC_005261.1 + 34289 0.66 0.993901
Target:  5'- -cGGCCgGCGggGacGCCGg---GAGCGa -3'
miRNA:   3'- caUCGGgUGCuuU--CGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 73854 0.66 0.993901
Target:  5'- cGgcGCCC-CGGAGGCUuuuaagcggGUcgUGGGCGu -3'
miRNA:   3'- -CauCGGGuGCUUUCGG---------UAuaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 134222 0.66 0.993901
Target:  5'- -cGGCCUGCGu-GGCCA---UGAGCc -3'
miRNA:   3'- caUCGGGUGCuuUCGGUauaACUCGu -5'
23570 3' -49.8 NC_005261.1 + 63464 0.66 0.993901
Target:  5'- --cGCCCGCGAGGGUugCAcGgcGAGCGg -3'
miRNA:   3'- cauCGGGUGCUUUCG--GUaUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 83351 0.66 0.993808
Target:  5'- cGUGGCCCGCaGGAAGgCGUccacgucGgcGAGCGc -3'
miRNA:   3'- -CAUCGGGUG-CUUUCgGUA-------UaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 40179 0.66 0.993326
Target:  5'- -gGGCCCACagGggGGCCAUcuuuauuucGUacagcgaguacgcgaUGAGCGu -3'
miRNA:   3'- caUCGGGUG--CuuUCGGUA---------UA---------------ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 131327 0.66 0.992918
Target:  5'- cGUGGCCUACGuguaccuGGCCuacuUUGAGgGg -3'
miRNA:   3'- -CAUCGGGUGCuu-----UCGGuau-AACUCgU- -5'
23570 3' -49.8 NC_005261.1 + 101240 0.66 0.992918
Target:  5'- -cAGCCCGCGGGcuCCGgcugGAGCc -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGu -5'
23570 3' -49.8 NC_005261.1 + 74904 0.66 0.992918
Target:  5'- -cGGCCCGCGcuGGCCGcgcgggGgaGGGCGa -3'
miRNA:   3'- caUCGGGUGCuuUCGGUa-----UaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 49809 0.66 0.991813
Target:  5'- gGUGGCCCGCGAAGuCCAagaUGUcGuGCu -3'
miRNA:   3'- -CAUCGGGUGCUUUcGGU---AUAaCuCGu -5'
23570 3' -49.8 NC_005261.1 + 122804 0.66 0.991813
Target:  5'- -cGGCCCGCGcccGGCCGacucUGGGCu -3'
miRNA:   3'- caUCGGGUGCuu-UCGGUaua-ACUCGu -5'
23570 3' -49.8 NC_005261.1 + 79958 0.66 0.990576
Target:  5'- cGUGGUCCugGAuguGGUCGUAggUGAacuGCAg -3'
miRNA:   3'- -CAUCGGGugCUu--UCGGUAUa-ACU---CGU- -5'
23570 3' -49.8 NC_005261.1 + 14778 0.66 0.990576
Target:  5'- -aGGCCCGCGAcGGCguCAUGcgcGAGCu -3'
miRNA:   3'- caUCGGGUGCUuUCG--GUAUaa-CUCGu -5'
23570 3' -49.8 NC_005261.1 + 26432 0.66 0.990312
Target:  5'- -cGGCCgACGcGAGCCAggcguccagGGGCAc -3'
miRNA:   3'- caUCGGgUGCuUUCGGUauaa-----CUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.