Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23570 | 3' | -49.8 | NC_005261.1 | + | 46701 | 0.66 | 0.994771 |
Target: 5'- cGUAGCCCGgGuccucGGCCAUGUccGAGa- -3' miRNA: 3'- -CAUCGGGUgCuu---UCGGUAUAa-CUCgu -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 124205 | 0.66 | 0.994771 |
Target: 5'- aUGGCCC-CGcuGGCCAUcgcaGAGCu -3' miRNA: 3'- cAUCGGGuGCuuUCGGUAuaa-CUCGu -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 70881 | 0.66 | 0.994771 |
Target: 5'- cGUGGCCgGCGGugcacauGGCCGUGcacUUGcGCGc -3' miRNA: 3'- -CAUCGGgUGCUu------UCGGUAU---AACuCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 40239 | 0.66 | 0.994771 |
Target: 5'- cUGGCCC--GggGGCCG---UGAGCGc -3' miRNA: 3'- cAUCGGGugCuuUCGGUauaACUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 71437 | 0.66 | 0.994436 |
Target: 5'- -gGGCCCGCGGcgcgcAGCCGccgccucccgGAGCAu -3' miRNA: 3'- caUCGGGUGCUu----UCGGUauaa------CUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 34289 | 0.66 | 0.993901 |
Target: 5'- -cGGCCgGCGggGacGCCGg---GAGCGa -3' miRNA: 3'- caUCGGgUGCuuU--CGGUauaaCUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 29705 | 0.66 | 0.993901 |
Target: 5'- -cGGCCUGCGu-GGCCA---UGAGCc -3' miRNA: 3'- caUCGGGUGCuuUCGGUauaACUCGu -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 134222 | 0.66 | 0.993901 |
Target: 5'- -cGGCCUGCGu-GGCCA---UGAGCc -3' miRNA: 3'- caUCGGGUGCuuUCGGUauaACUCGu -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 73854 | 0.66 | 0.993901 |
Target: 5'- cGgcGCCC-CGGAGGCUuuuaagcggGUcgUGGGCGu -3' miRNA: 3'- -CauCGGGuGCUUUCGG---------UAuaACUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 63464 | 0.66 | 0.993901 |
Target: 5'- --cGCCCGCGAGGGUugCAcGgcGAGCGg -3' miRNA: 3'- cauCGGGUGCUUUCG--GUaUaaCUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 83351 | 0.66 | 0.993808 |
Target: 5'- cGUGGCCCGCaGGAAGgCGUccacgucGgcGAGCGc -3' miRNA: 3'- -CAUCGGGUG-CUUUCgGUA-------UaaCUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 40179 | 0.66 | 0.993326 |
Target: 5'- -gGGCCCACagGggGGCCAUcuuuauuucGUacagcgaguacgcgaUGAGCGu -3' miRNA: 3'- caUCGGGUG--CuuUCGGUA---------UA---------------ACUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 74904 | 0.66 | 0.992918 |
Target: 5'- -cGGCCCGCGcuGGCCGcgcgggGgaGGGCGa -3' miRNA: 3'- caUCGGGUGCuuUCGGUa-----UaaCUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 131327 | 0.66 | 0.992918 |
Target: 5'- cGUGGCCUACGuguaccuGGCCuacuUUGAGgGg -3' miRNA: 3'- -CAUCGGGUGCuu-----UCGGuau-AACUCgU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 101240 | 0.66 | 0.992918 |
Target: 5'- -cAGCCCGCGGGcuCCGgcugGAGCc -3' miRNA: 3'- caUCGGGUGCUUucGGUauaaCUCGu -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 49809 | 0.66 | 0.991813 |
Target: 5'- gGUGGCCCGCGAAGuCCAagaUGUcGuGCu -3' miRNA: 3'- -CAUCGGGUGCUUUcGGU---AUAaCuCGu -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 122804 | 0.66 | 0.991813 |
Target: 5'- -cGGCCCGCGcccGGCCGacucUGGGCu -3' miRNA: 3'- caUCGGGUGCuu-UCGGUaua-ACUCGu -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 14778 | 0.66 | 0.990576 |
Target: 5'- -aGGCCCGCGAcGGCguCAUGcgcGAGCu -3' miRNA: 3'- caUCGGGUGCUuUCG--GUAUaa-CUCGu -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 79958 | 0.66 | 0.990576 |
Target: 5'- cGUGGUCCugGAuguGGUCGUAggUGAacuGCAg -3' miRNA: 3'- -CAUCGGGugCUu--UCGGUAUa-ACU---CGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 26432 | 0.66 | 0.990312 |
Target: 5'- -cGGCCgACGcGAGCCAggcguccagGGGCAc -3' miRNA: 3'- caUCGGgUGCuUUCGGUauaa-----CUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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