miRNA display CGI


Results 61 - 80 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 65453 0.69 0.961797
Target:  5'- -cGGCCCcggacgcgugcGCGGccGCCGUGcUGGGCAu -3'
miRNA:   3'- caUCGGG-----------UGCUuuCGGUAUaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 28920 0.69 0.953874
Target:  5'- --cGCUCGCGGAGGCCA----GGGCGg -3'
miRNA:   3'- cauCGGGUGCUUUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 27498 0.7 0.940028
Target:  5'- -cAGCCCgcugGCGAAGGUgGUuucGUUGAGCu -3'
miRNA:   3'- caUCGGG----UGCUUUCGgUA---UAACUCGu -5'
23570 3' -49.8 NC_005261.1 + 135223 0.71 0.903691
Target:  5'- -aGGCCCGCGGGAGCCccggcgccGGGCc -3'
miRNA:   3'- caUCGGGUGCUUUCGGuauaa---CUCGu -5'
23570 3' -49.8 NC_005261.1 + 81435 0.72 0.883896
Target:  5'- cGUGGCCCGCu---GCCGgaagUGGGCAa -3'
miRNA:   3'- -CAUCGGGUGcuuuCGGUaua-ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 331 0.68 0.979807
Target:  5'- -gGGCCCGCGAGcaCCAg---GGGCGg -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 19016 0.68 0.979807
Target:  5'- --cGCCC-CGGcaGGGCCAUGgcGGGCGc -3'
miRNA:   3'- cauCGGGuGCU--UUCGGUAUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 122804 0.66 0.991813
Target:  5'- -cGGCCCGCGcccGGCCGacucUGGGCu -3'
miRNA:   3'- caUCGGGUGCuu-UCGGUaua-ACUCGu -5'
23570 3' -49.8 NC_005261.1 + 49809 0.66 0.991813
Target:  5'- gGUGGCCCGCGAAGuCCAagaUGUcGuGCu -3'
miRNA:   3'- -CAUCGGGUGCUUUcGGU---AUAaCuCGu -5'
23570 3' -49.8 NC_005261.1 + 14778 0.66 0.990576
Target:  5'- -aGGCCCGCGAcGGCguCAUGcgcGAGCu -3'
miRNA:   3'- caUCGGGUGCUuUCG--GUAUaa-CUCGu -5'
23570 3' -49.8 NC_005261.1 + 26432 0.66 0.990312
Target:  5'- -cGGCCgACGcGAGCCAggcguccagGGGCAc -3'
miRNA:   3'- caUCGGgUGCuUUCGGUauaa-----CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 12159 0.67 0.989196
Target:  5'- --cGCCCGCcGAGGCCGgc--GGGCGg -3'
miRNA:   3'- cauCGGGUGcUUUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 96028 0.67 0.987664
Target:  5'- gGgcGCCCGCGcgGcGCCGUG--GAGCGg -3'
miRNA:   3'- -CauCGGGUGCuuU-CGGUAUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 64365 0.67 0.987664
Target:  5'- --cGCCCACGAcccgcuuaaAAGCCuccg-GGGCGc -3'
miRNA:   3'- cauCGGGUGCU---------UUCGGuauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 60188 0.67 0.987664
Target:  5'- -gGGCCCGCGAccaccGGCUGgggcgGAGCGg -3'
miRNA:   3'- caUCGGGUGCUu----UCGGUauaa-CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 6917 0.67 0.987664
Target:  5'- cGUAGgCCACGAAcuccgggucGGCCAccUUGAGg- -3'
miRNA:   3'- -CAUCgGGUGCUU---------UCGGUauAACUCgu -5'
23570 3' -49.8 NC_005261.1 + 3365 0.67 0.987664
Target:  5'- -gGGCCCGCGggGGCgc----GGGCGc -3'
miRNA:   3'- caUCGGGUGCuuUCGguauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 98364 0.67 0.985969
Target:  5'- -cGGCCUGCu--GGCCGUGUgccUGGGCGc -3'
miRNA:   3'- caUCGGGUGcuuUCGGUAUA---ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 23955 0.68 0.979807
Target:  5'- cGUAGCCCGCGcgcGCCAccgcgucguuuuUAaaGAGCAg -3'
miRNA:   3'- -CAUCGGGUGCuuuCGGU------------AUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 21315 0.68 0.979807
Target:  5'- -cAGCCCGCGgcGGCUGUcgacGUUG-GCGa -3'
miRNA:   3'- caUCGGGUGCuuUCGGUA----UAACuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.