miRNA display CGI


Results 1 - 20 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 77823 0.66 0.484312
Target:  5'- uGcCGCcCCAGCaccaccgccccccucGCCGCCaCAGCcGGCu -3'
miRNA:   3'- gC-GCGaGGUCG---------------CGGCGG-GUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 78168 0.66 0.484312
Target:  5'- cCGCGgaCCGGcCGCCGCUCuucgccgccgccgucGGCgccgacGGCGg -3'
miRNA:   3'- -GCGCgaGGUC-GCGGCGGG---------------UCGa-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 17919 0.66 0.483407
Target:  5'- gCGCGcCUCgCAGacagccuCGCCGCCCucgaagaacacgcgcAGCcgGGCGg -3'
miRNA:   3'- -GCGC-GAG-GUC-------GCGGCGGG---------------UCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 83004 0.66 0.481601
Target:  5'- uCGCGCaccgagccgccgucgCCGGCGCC-CCCGGgaGGg- -3'
miRNA:   3'- -GCGCGa--------------GGUCGCGGcGGGUCgaCCgc -5'
23571 3' -65.2 NC_005261.1 + 116697 0.66 0.481601
Target:  5'- aGCGCcucgcucaucggccgCCAGCuggccgacgucGCCGCCCuGCUGaGCc -3'
miRNA:   3'- gCGCGa--------------GGUCG-----------CGGCGGGuCGAC-CGc -5'
23571 3' -65.2 NC_005261.1 + 98436 0.66 0.480699
Target:  5'- gGCGCcggcggCC-GCGCCGCCCc-CcGGCGa -3'
miRNA:   3'- gCGCGa-----GGuCGCGGCGGGucGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 125159 0.66 0.480699
Target:  5'- cCGaCGggCCGGCGgacgCGCCCGGCaggGGCGc -3'
miRNA:   3'- -GC-GCgaGGUCGCg---GCGGGUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 106922 0.66 0.480699
Target:  5'- gCGCGCccgCgGGCcCCGCgCGGC-GGCGg -3'
miRNA:   3'- -GCGCGa--GgUCGcGGCGgGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 106568 0.66 0.480699
Target:  5'- gCGCGCgccggccCCGGgGCCGCCgC-GC-GGCGc -3'
miRNA:   3'- -GCGCGa------GGUCgCGGCGG-GuCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 135558 0.66 0.480699
Target:  5'- nGCGCcgCCGG-GUC-CCCAGCgcGGCGg -3'
miRNA:   3'- gCGCGa-GGUCgCGGcGGGUCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 41037 0.66 0.480699
Target:  5'- uCGuCGUUguccCCGGCGCCgGCCUcagAGCcGGCGg -3'
miRNA:   3'- -GC-GCGA----GGUCGCGG-CGGG---UCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 73355 0.66 0.480699
Target:  5'- gGCGCUCCcGcCGCCGCUgAuCUGGg- -3'
miRNA:   3'- gCGCGAGGuC-GCGGCGGgUcGACCgc -5'
23571 3' -65.2 NC_005261.1 + 107989 0.66 0.480699
Target:  5'- uCGUcuGCUCCAGCccGCCGucgggcagcCCCAGCagcGGCa -3'
miRNA:   3'- -GCG--CGAGGUCG--CGGC---------GGGUCGa--CCGc -5'
23571 3' -65.2 NC_005261.1 + 104162 0.66 0.480699
Target:  5'- cCGCGCcgUCCgcgGGCGCCGCgC-GCgggucgucgGGCGg -3'
miRNA:   3'- -GCGCG--AGG---UCGCGGCGgGuCGa--------CCGC- -5'
23571 3' -65.2 NC_005261.1 + 18579 0.66 0.480699
Target:  5'- --aGCUCCAgGCGCgCGCCgCcGgUGGCGu -3'
miRNA:   3'- gcgCGAGGU-CGCG-GCGG-GuCgACCGC- -5'
23571 3' -65.2 NC_005261.1 + 61000 0.66 0.480699
Target:  5'- cCGCGcCUCCGGCuccggcaucGCCGUCguGg-GGCGg -3'
miRNA:   3'- -GCGC-GAGGUCG---------CGGCGGguCgaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 125717 0.66 0.480699
Target:  5'- gGCGCggggcCCcGCGCgguCGCCCGGggGGCa -3'
miRNA:   3'- gCGCGa----GGuCGCG---GCGGGUCgaCCGc -5'
23571 3' -65.2 NC_005261.1 + 108171 0.66 0.480699
Target:  5'- aGCGCgUCUggAGCGCagGCCgCGGCcGGCa -3'
miRNA:   3'- gCGCG-AGG--UCGCGg-CGG-GUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 134618 0.66 0.480699
Target:  5'- gCGUGCUCCGG-GCaGCUgAGCugcuUGGCGc -3'
miRNA:   3'- -GCGCGAGGUCgCGgCGGgUCG----ACCGC- -5'
23571 3' -65.2 NC_005261.1 + 48850 0.66 0.480699
Target:  5'- cCGCGCagCAG-GCCcagcGCCCGGgccaUGGCGg -3'
miRNA:   3'- -GCGCGagGUCgCGG----CGGGUCg---ACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.