miRNA display CGI


Results 21 - 40 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 3' -53.9 NC_005261.1 + 108995 0.66 0.944668
Target:  5'- uCGcGCG-GCgc-CGCGGcGUAGCCUGCg -3'
miRNA:   3'- -GCuCGCaCGacuGCGUC-CAUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 105565 0.66 0.953316
Target:  5'- gCGGGCGgcgGCguuagcGGCGCGGGggGCUgGCc -3'
miRNA:   3'- -GCUCGCa--CGa-----CUGCGUCCauUGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 101615 0.66 0.949114
Target:  5'- cCGuuUGUGCgccggGGCGCAGG-AGCgCUGCc -3'
miRNA:   3'- -GCucGCACGa----CUGCGUCCaUUG-GAUG- -5'
23572 3' -53.9 NC_005261.1 + 100501 0.69 0.856493
Target:  5'- -cGGCGUGCcgucGGCGUccAGGUAGCCgcgcgGCg -3'
miRNA:   3'- gcUCGCACGa---CUGCG--UCCAUUGGa----UG- -5'
23572 3' -53.9 NC_005261.1 + 99799 0.66 0.939975
Target:  5'- -aGGCGUGCaggUGACGaAGGgcGCCcGCg -3'
miRNA:   3'- gcUCGCACG---ACUGCgUCCauUGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 99515 0.68 0.864333
Target:  5'- gCGGGCGcUGggGGCGCGGGccUGGCCgGCu -3'
miRNA:   3'- -GCUCGC-ACgaCUGCGUCC--AUUGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 98084 0.66 0.94421
Target:  5'- gCGAGCagguggugugugaGUGC-GGCGCGGGcGACCg-- -3'
miRNA:   3'- -GCUCG-------------CACGaCUGCGUCCaUUGGaug -5'
23572 3' -53.9 NC_005261.1 + 97701 0.71 0.748069
Target:  5'- gGGGCGguggGgaGACgGCGGGUGGCCcggGCg -3'
miRNA:   3'- gCUCGCa---CgaCUG-CGUCCAUUGGa--UG- -5'
23572 3' -53.9 NC_005261.1 + 97634 0.73 0.613812
Target:  5'- gCGGGCGgaGCgGGCGCGGGUGccgcACCUGg -3'
miRNA:   3'- -GCUCGCa-CGaCUGCGUCCAU----UGGAUg -5'
23572 3' -53.9 NC_005261.1 + 96857 0.72 0.687053
Target:  5'- aCGGGgG-GCUcggggGGCGCGGGUAGCgUGCg -3'
miRNA:   3'- -GCUCgCaCGA-----CUGCGUCCAUUGgAUG- -5'
23572 3' -53.9 NC_005261.1 + 96113 0.68 0.879347
Target:  5'- uCGGGaCGUcGCUGGC-CAuGGUcGACCUGCg -3'
miRNA:   3'- -GCUC-GCA-CGACUGcGU-CCA-UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 94517 0.66 0.939975
Target:  5'- cCGcGCGUGCUcgcgcagcgcGugGCAGGccagGACCUcGCc -3'
miRNA:   3'- -GCuCGCACGA----------CugCGUCCa---UUGGA-UG- -5'
23572 3' -53.9 NC_005261.1 + 89590 0.68 0.893436
Target:  5'- cCGGGCGgggGCcGGCGCAGGggcggGGCgUGg -3'
miRNA:   3'- -GCUCGCa--CGaCUGCGUCCa----UUGgAUg -5'
23572 3' -53.9 NC_005261.1 + 89099 0.76 0.452704
Target:  5'- cCGGGCGcGCUGGCGCGcGcGUGGCaCUGCg -3'
miRNA:   3'- -GCUCGCaCGACUGCGU-C-CAUUG-GAUG- -5'
23572 3' -53.9 NC_005261.1 + 87883 0.72 0.670404
Target:  5'- aCGGGCGcggccuaccggcggcUGCUGGUGCAGGUGgaaaGCUUGCa -3'
miRNA:   3'- -GCUCGC---------------ACGACUGCGUCCAU----UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 87816 0.7 0.805235
Target:  5'- aCGAGCGgcccGC-GACGCGGGgcuGCCgGCc -3'
miRNA:   3'- -GCUCGCa---CGaCUGCGUCCau-UGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 86932 0.71 0.717908
Target:  5'- -cGGCGUGCgcGAgGUAGGUGGCCgcgGCc -3'
miRNA:   3'- gcUCGCACGa-CUgCGUCCAUUGGa--UG- -5'
23572 3' -53.9 NC_005261.1 + 84255 0.68 0.879347
Target:  5'- gGGGCGcuugGCccccggcaUGGCGCAGGUGccGCCgGCg -3'
miRNA:   3'- gCUCGCa---CG--------ACUGCGUCCAU--UGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 83986 0.7 0.777266
Target:  5'- aGGGCGcGCUGcacaugagcgcGCGCcGcGUGACCUGCg -3'
miRNA:   3'- gCUCGCaCGAC-----------UGCGuC-CAUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 83712 0.69 0.856493
Target:  5'- uGGcGCGU-CUGACGCcgucgccggAGGgcGCCUGCg -3'
miRNA:   3'- gCU-CGCAcGACUGCG---------UCCauUGGAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.