miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 32231 0.66 0.659232
Target:  5'- uGUCGuuucuGCGGCUGgccuUCGCGGGCggcgucgacgccgcGCUGGg -3'
miRNA:   3'- gCAGC-----UGUCGGC----GGCGCCCGa-------------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 20855 0.66 0.655318
Target:  5'- gCGU-GGCGGCucuugCGCCGCGGGCcgGCc-- -3'
miRNA:   3'- -GCAgCUGUCG-----GCGGCGCCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 23113 0.66 0.655318
Target:  5'- -aUCGugGG-CGCCGUGGGCaGCg-- -3'
miRNA:   3'- gcAGCugUCgGCGGCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 108992 0.66 0.655318
Target:  5'- cCGUCGcGCGG-CGCCGCGGcGUagccUGCgcgGGc -3'
miRNA:   3'- -GCAGC-UGUCgGCGGCGCC-CG----ACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 35291 0.66 0.655318
Target:  5'- cCGcCGccGCAGCgGCgGCGGcGCUGCg-- -3'
miRNA:   3'- -GCaGC--UGUCGgCGgCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 33787 0.66 0.655318
Target:  5'- cCGcCGGCGGCgGCgaCGCGGGCccGCUc- -3'
miRNA:   3'- -GCaGCUGUCGgCG--GCGCCCGa-CGAcc -5'
23573 3' -62.2 NC_005261.1 + 35322 0.66 0.655318
Target:  5'- aG-CGGCGGaggCGCUGCGGGCcagggGCgcgGGg -3'
miRNA:   3'- gCaGCUGUCg--GCGGCGCCCGa----CGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 7547 0.66 0.655318
Target:  5'- -cUCGAgCAGCaCGCgCGCGGGCagggGCUc- -3'
miRNA:   3'- gcAGCU-GUCG-GCG-GCGCCCGa---CGAcc -5'
23573 3' -62.2 NC_005261.1 + 136461 0.66 0.655318
Target:  5'- aCG-CGGCAGCCccagacucGCgCGCGGGCaGCa-- -3'
miRNA:   3'- -GCaGCUGUCGG--------CG-GCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 1739 0.66 0.655318
Target:  5'- gCGUCGGC-GCCgaGCUGCucGCUGCUGc -3'
miRNA:   3'- -GCAGCUGuCGG--CGGCGccCGACGACc -5'
23573 3' -62.2 NC_005261.1 + 17179 0.66 0.655318
Target:  5'- gCGUgGGCAGCCcuGCCGC-GGCgGCg-- -3'
miRNA:   3'- -GCAgCUGUCGG--CGGCGcCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 31547 0.66 0.655318
Target:  5'- gCGaUCGGC-GCgGCCcuCGGGCgcgcGCUGGa -3'
miRNA:   3'- -GC-AGCUGuCGgCGGc-GCCCGa---CGACC- -5'
23573 3' -62.2 NC_005261.1 + 82990 0.66 0.655318
Target:  5'- -cUCG-CGGCgGCUGCGGuGCUGCc-- -3'
miRNA:   3'- gcAGCuGUCGgCGGCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 75476 0.66 0.655318
Target:  5'- cCGggCGGCGGCgcggGCCGCuacgagcgcgGGGC-GCUGGa -3'
miRNA:   3'- -GCa-GCUGUCGg---CGGCG----------CCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 4475 0.66 0.655318
Target:  5'- cCGUCGcGCGG-CGCCGCGGcGUagccUGCgcgGGc -3'
miRNA:   3'- -GCAGC-UGUCgGCGGCGCC-CG----ACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 121580 0.66 0.655318
Target:  5'- -cUCG-CuGCCaGCCG-GGGaCUGCUGGu -3'
miRNA:   3'- gcAGCuGuCGG-CGGCgCCC-GACGACC- -5'
23573 3' -62.2 NC_005261.1 + 117888 0.66 0.655318
Target:  5'- -cUCG-CGGCaGCCGCGGGCgucGCUc- -3'
miRNA:   3'- gcAGCuGUCGgCGGCGCCCGa--CGAcc -5'
23573 3' -62.2 NC_005261.1 + 53563 0.66 0.655318
Target:  5'- uGUgCG-CGGCCGCgggCGCGGGCgGCgccagccgGGa -3'
miRNA:   3'- gCA-GCuGUCGGCG---GCGCCCGaCGa-------CC- -5'
23573 3' -62.2 NC_005261.1 + 55994 0.66 0.655318
Target:  5'- -aUCGGCAaCCGCgGCGGGg-GCgGGg -3'
miRNA:   3'- gcAGCUGUcGGCGgCGCCCgaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 40035 0.66 0.654339
Target:  5'- aGUCGACcgcgaccAGCgUGgCGaCGGGCccgUGCUGGa -3'
miRNA:   3'- gCAGCUG-------UCG-GCgGC-GCCCG---ACGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.