miRNA display CGI


Results 61 - 80 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 89088 0.66 0.61611
Target:  5'- --cCGGCuGCgGCC-CGGGCgcGCUGGc -3'
miRNA:   3'- gcaGCUGuCGgCGGcGCCCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 118581 0.66 0.61611
Target:  5'- gCGgCGGCGcgcgccGCCGCCGCGGaGCUcGCg-- -3'
miRNA:   3'- -GCaGCUGU------CGGCGGCGCC-CGA-CGacc -5'
23573 3' -62.2 NC_005261.1 + 17179 0.66 0.655318
Target:  5'- gCGUgGGCAGCCcuGCCGC-GGCgGCg-- -3'
miRNA:   3'- -GCAgCUGUCGG--CGGCGcCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 75857 0.66 0.645524
Target:  5'- gCGcCGACGGCggccccgacggCGCCGUGGGC-GCg-- -3'
miRNA:   3'- -GCaGCUGUCG-----------GCGGCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 95742 0.66 0.645524
Target:  5'- aG-CGGCGccgccgccGCCGCCGgGGGC-GCcGGg -3'
miRNA:   3'- gCaGCUGU--------CGGCGGCgCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 20695 0.66 0.644544
Target:  5'- gGUUGACGGCUacaaccuGCUGaacuCGGGCcgcGCUGGg -3'
miRNA:   3'- gCAGCUGUCGG-------CGGC----GCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 133886 0.66 0.63572
Target:  5'- gGUCuGCgcaAGcCCGCgGCGcGCUGCUGGc -3'
miRNA:   3'- gCAGcUG---UC-GGCGgCGCcCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 68282 0.66 0.63572
Target:  5'- gCG-CGGCggGGCCccgGCCGCGGGC-GC-GGa -3'
miRNA:   3'- -GCaGCUG--UCGG---CGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 3397 0.66 0.625913
Target:  5'- gCGcCGGCAcuuCCGCCgGCGGGCUGaaGa -3'
miRNA:   3'- -GCaGCUGUc--GGCGG-CGCCCGACgaCc -5'
23573 3' -62.2 NC_005261.1 + 86208 0.66 0.625913
Target:  5'- gCGUCGGCGcGCCGaaCCG-GGGCaGCcGGu -3'
miRNA:   3'- -GCAGCUGU-CGGC--GGCgCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 109825 0.67 0.55775
Target:  5'- cCG-CGGCGGCCGCCGaaucuGGCgugccGUUGGu -3'
miRNA:   3'- -GCaGCUGUCGGCGGCgc---CCGa----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 33352 0.67 0.55775
Target:  5'- cCGcCGcCAccGCCGCCGggccgcgcCGGGCUGCgGGc -3'
miRNA:   3'- -GCaGCuGU--CGGCGGC--------GCCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 91481 0.66 0.613171
Target:  5'- aG-CGGC-GCCGCCGCGGccgccGCccgccccgcgcgccUGCUGGu -3'
miRNA:   3'- gCaGCUGuCGGCGGCGCC-----CG--------------ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 106543 0.66 0.606319
Target:  5'- -cUCGGCGGCgGCCGCguccGGGCcgGCg-- -3'
miRNA:   3'- gcAGCUGUCGgCGGCG----CCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 31752 0.67 0.600452
Target:  5'- cCGUCgGGCAggcgcacguguaccuGCgCGCCGCGGuGCUGCc-- -3'
miRNA:   3'- -GCAG-CUGU---------------CG-GCGGCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 85372 0.67 0.596545
Target:  5'- uGUUcGC-GCCGCCGCccucGGGCUuCUGGu -3'
miRNA:   3'- gCAGcUGuCGGCGGCG----CCCGAcGACC- -5'
23573 3' -62.2 NC_005261.1 + 37184 0.67 0.586795
Target:  5'- ---gGGC-GCUGCUgGCGGcGCUGCUGGc -3'
miRNA:   3'- gcagCUGuCGGCGG-CGCC-CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 130738 0.67 0.577076
Target:  5'- cCGcCGACAuGaUCGCCGC--GCUGCUGGu -3'
miRNA:   3'- -GCaGCUGU-C-GGCGGCGccCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 104277 0.67 0.567392
Target:  5'- -cUCGGCGGCUG-CGCGGGCcucGCaGGc -3'
miRNA:   3'- gcAGCUGUCGGCgGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 33816 0.67 0.567392
Target:  5'- uGUCuuugGGCGGCCGgggggCGCGGGCccccuggcGCUGGg -3'
miRNA:   3'- gCAG----CUGUCGGCg----GCGCCCGa-------CGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.