miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 31116 0.66 0.948918
Target:  5'- uCGCCGGCGcgguGGCGCGGcuGGggGCGc- -3'
miRNA:   3'- -GCGGUUGUu---CUGCGCCuuCCa-CGUcu -5'
23573 5' -54.1 NC_005261.1 + 23465 0.66 0.948918
Target:  5'- gCGCCAggcccgcggcgGCGAGuGCGCGGGcccgccugggcAGGcGCGGGc -3'
miRNA:   3'- -GCGGU-----------UGUUC-UGCGCCU-----------UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 93900 0.66 0.948918
Target:  5'- uCGCCAGCGacugcGGGCGCGGcgcccGCGGGc -3'
miRNA:   3'- -GCGGUUGU-----UCUGCGCCuuccaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 127982 0.66 0.948918
Target:  5'- gCGCCAggcccgcggcgGCGAGuGCGCGGGcccgccugggcAGGcGCGGGc -3'
miRNA:   3'- -GCGGU-----------UGUUC-UGCGCCU-----------UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 20651 0.66 0.948918
Target:  5'- cCGCCcGCAccgccGGugGCGGcAGcG-GCAGAg -3'
miRNA:   3'- -GCGGuUGU-----UCugCGCCuUC-CaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 74702 0.66 0.948918
Target:  5'- gGCCGccGCGcGGGCGCGGAaccGGGccgcgGCAGc -3'
miRNA:   3'- gCGGU--UGU-UCUGCGCCU---UCCa----CGUCu -5'
23573 5' -54.1 NC_005261.1 + 43772 0.66 0.948918
Target:  5'- uGCuCGugGGGcggcGCGCGGAGGGcgccGCGGGu -3'
miRNA:   3'- gCG-GUugUUC----UGCGCCUUCCa---CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 68584 0.66 0.948918
Target:  5'- cCGCCGagGCGGGcCGCGGGAGcGggGCcGAc -3'
miRNA:   3'- -GCGGU--UGUUCuGCGCCUUC-Ca-CGuCU- -5'
23573 5' -54.1 NC_005261.1 + 62115 0.66 0.948918
Target:  5'- gCGCCGGCGcGGCGCGGug---GCGGu -3'
miRNA:   3'- -GCGGUUGUuCUGCGCCuuccaCGUCu -5'
23573 5' -54.1 NC_005261.1 + 29969 0.66 0.948918
Target:  5'- gGCCGugGAGACGCuGGccGcG-GCGGGg -3'
miRNA:   3'- gCGGUugUUCUGCG-CCuuC-CaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 46766 0.66 0.948918
Target:  5'- gCGCCGcuGgGAGGCGCGGgcGGgGCc-- -3'
miRNA:   3'- -GCGGU--UgUUCUGCGCCuuCCaCGucu -5'
23573 5' -54.1 NC_005261.1 + 6824 0.66 0.948918
Target:  5'- uGCCGGCAGcGGCGgGGGGcucGGUGgCGGu -3'
miRNA:   3'- gCGGUUGUU-CUGCgCCUU---CCAC-GUCu -5'
23573 5' -54.1 NC_005261.1 + 84286 0.66 0.948485
Target:  5'- cCGCCGGCGGccccggccccggcGGCGCcGAAGGcGUAGGu -3'
miRNA:   3'- -GCGGUUGUU-------------CUGCGcCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 133531 0.66 0.94448
Target:  5'- gGCCGAUgccaAAGACGCG-AGGGUuGgGGAu -3'
miRNA:   3'- gCGGUUG----UUCUGCGCcUUCCA-CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 49252 0.66 0.94448
Target:  5'- cCGCCGcgGCGGcgucGGCGCgcacguccgcgaGGAAGGcGCAGAa -3'
miRNA:   3'- -GCGGU--UGUU----CUGCG------------CCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 22720 0.66 0.94448
Target:  5'- gGUgCAGCAGGugGUGcGggGGcUGCGGc -3'
miRNA:   3'- gCG-GUUGUUCugCGC-CuuCC-ACGUCu -5'
23573 5' -54.1 NC_005261.1 + 68219 0.66 0.94448
Target:  5'- gGCCGACAAcggcgacccuGACgGCGGggGcGUGUucguGGAc -3'
miRNA:   3'- gCGGUUGUU----------CUG-CGCCuuC-CACG----UCU- -5'
23573 5' -54.1 NC_005261.1 + 89599 0.66 0.94448
Target:  5'- gGCCGgcgcagggGCGGGGCGUGGGgcuGGGcGCGGc -3'
miRNA:   3'- gCGGU--------UGUUCUGCGCCU---UCCaCGUCu -5'
23573 5' -54.1 NC_005261.1 + 104986 0.66 0.94448
Target:  5'- gGCCGGCGGGaugGCGCGGGgaggagaggAGGgagGgGGAg -3'
miRNA:   3'- gCGGUUGUUC---UGCGCCU---------UCCa--CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 136374 0.66 0.94448
Target:  5'- aGCCGuaGCGAGACGaggugcCGGGacuGGGgGCGGAc -3'
miRNA:   3'- gCGGU--UGUUCUGC------GCCU---UCCaCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.