miRNA display CGI


Results 61 - 80 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 55801 0.71 0.708595
Target:  5'- gGCCGGCcgGGGGCGCGGAcggcGGGgccggcGCGGGg -3'
miRNA:   3'- gCGGUUG--UUCUGCGCCU----UCCa-----CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 105634 0.71 0.707574
Target:  5'- aCGCgGACGacgaggaGGACGCGGAGGacGCGGAc -3'
miRNA:   3'- -GCGgUUGU-------UCUGCGCCUUCcaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 84800 0.71 0.747788
Target:  5'- aCGcCCGACGggcuggcGGACgGCGGggGGccGCAGAc -3'
miRNA:   3'- -GC-GGUUGU-------UCUG-CGCCuuCCa-CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 26944 0.7 0.758577
Target:  5'- aGCgCGGCGgaAGGCGCGGGccGGGUGCu-- -3'
miRNA:   3'- gCG-GUUGU--UCUGCGCCU--UCCACGucu -5'
23573 5' -54.1 NC_005261.1 + 93373 0.7 0.796524
Target:  5'- gCGCCGGCGuGA-GCaGGAGGuUGCAGAg -3'
miRNA:   3'- -GCGGUUGUuCUgCGcCUUCC-ACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 137432 0.7 0.804742
Target:  5'- gCGCgCGugGGGggcggcgGCGCGGggGGgggGCGGGg -3'
miRNA:   3'- -GCG-GUugUUC-------UGCGCCuuCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 39878 0.7 0.768263
Target:  5'- gGCCAGCAGGccgcgcGCGCGGcu-GUGCAGc -3'
miRNA:   3'- gCGGUUGUUC------UGCGCCuucCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 74684 0.7 0.758577
Target:  5'- gCGCCAGCGGGcacggcGCGCGGGcAGGccGCGGu -3'
miRNA:   3'- -GCGGUUGUUC------UGCGCCU-UCCa-CGUCu -5'
23573 5' -54.1 NC_005261.1 + 62891 0.7 0.768263
Target:  5'- aGCCcgcGCGAGGCGgGGcGGG-GCGGAc -3'
miRNA:   3'- gCGGu--UGUUCUGCgCCuUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 104580 0.7 0.805647
Target:  5'- gGCCGAaaucGGcgcGCGCGGGggcgGGGUGCGGGg -3'
miRNA:   3'- gCGGUUgu--UC---UGCGCCU----UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 137745 0.7 0.805647
Target:  5'- gGCCGAaaucGGcgcGCGCGGGggcgGGGUGCGGGg -3'
miRNA:   3'- gCGGUUgu--UC---UGCGCCU----UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 15953 0.7 0.805647
Target:  5'- aGCCGgggGCGAGugGCGGgcGGgGgAGGg -3'
miRNA:   3'- gCGGU---UGUUCugCGCCuuCCaCgUCU- -5'
23573 5' -54.1 NC_005261.1 + 62 0.7 0.805647
Target:  5'- gGCCGAaaucGGcgcGCGCGGGggcgGGGUGCGGGg -3'
miRNA:   3'- gCGGUUgu--UC---UGCGCCU----UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 113732 0.7 0.796524
Target:  5'- aGCCAAU-GGACG-GGAAGGUGCc-- -3'
miRNA:   3'- gCGGUUGuUCUGCgCCUUCCACGucu -5'
23573 5' -54.1 NC_005261.1 + 22736 0.7 0.796524
Target:  5'- gCGCCAGucGGGCGCGGGGcGGcgGCGGc -3'
miRNA:   3'- -GCGGUUguUCUGCGCCUU-CCa-CGUCu -5'
23573 5' -54.1 NC_005261.1 + 127253 0.7 0.796524
Target:  5'- gCGCCAGucGGGCGCGGGGcGGcgGCGGc -3'
miRNA:   3'- -GCGGUUguUCUGCGCCUU-CCa-CGUCu -5'
23573 5' -54.1 NC_005261.1 + 102732 0.7 0.796524
Target:  5'- uGCCAGCGGGGCaaGGgcGGgugccgcgGCAGGg -3'
miRNA:   3'- gCGGUUGUUCUGcgCCuuCCa-------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 69571 0.7 0.787246
Target:  5'- aCGCCGGC--GGCGCGGgcGGcGguGAc -3'
miRNA:   3'- -GCGGUUGuuCUGCGCCuuCCaCguCU- -5'
23573 5' -54.1 NC_005261.1 + 55718 0.7 0.777822
Target:  5'- gGCCGACucGGGCGaagaGGggGGUGgAGc -3'
miRNA:   3'- gCGGUUGu-UCUGCg---CCuuCCACgUCu -5'
23573 5' -54.1 NC_005261.1 + 101344 0.7 0.768263
Target:  5'- gCGCCuugGCGaggaaGGGCGCGGGccAGcGUGCGGGg -3'
miRNA:   3'- -GCGGu--UGU-----UCUGCGCCU--UC-CACGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.