miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 3' -59.9 NC_005261.1 + 108456 0.79 0.148143
Target:  5'- aGCGCGUCGUCGGCgaggauCUCCGcgUCGGCGc -3'
miRNA:   3'- -UGUGCAGCAGCCG------GAGGCagAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 107533 0.67 0.713906
Target:  5'- aGCGCGUCGgCGGCCaccagCaCGUCcgagagcacggcagCGGCGa -3'
miRNA:   3'- -UGUGCAGCaGCCGGa----G-GCAGa-------------GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 107156 0.76 0.257425
Target:  5'- cCAUGgaggCGgccaGcGCCUCCGUCUCGGCGg -3'
miRNA:   3'- uGUGCa---GCag--C-CGGAGGCAGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 106942 0.71 0.486725
Target:  5'- gACACG-CGcaccUCGGCCcgggcgcgcUCCGcCUCGGCGc -3'
miRNA:   3'- -UGUGCaGC----AGCCGG---------AGGCaGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 106840 0.67 0.700365
Target:  5'- uGCGCGUCGUCcaGCCcgCCGcCUgGGgGg -3'
miRNA:   3'- -UGUGCAGCAGc-CGGa-GGCaGAgCCgC- -5'
23574 3' -59.9 NC_005261.1 + 106101 0.72 0.424487
Target:  5'- uCGCGaCGUCGGCCggCGUCgcCGGCGc -3'
miRNA:   3'- uGUGCaGCAGCCGGagGCAGa-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 105221 0.67 0.719672
Target:  5'- cGCGCGggcCG-CGGCCgcggCCGugaUCUgCGGCGg -3'
miRNA:   3'- -UGUGCa--GCaGCCGGa---GGC---AGA-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 104332 0.69 0.592023
Target:  5'- cGCGCGUCcagCGGCCggCCGUCgcgCaGCGc -3'
miRNA:   3'- -UGUGCAGca-GCCGGa-GGCAGa--GcCGC- -5'
23574 3' -59.9 NC_005261.1 + 103629 0.67 0.671024
Target:  5'- aGCGCGUCGgccaGGCCgucgUCGUCgaagccgcacUCGGCc -3'
miRNA:   3'- -UGUGCAGCag--CCGGa---GGCAG----------AGCCGc -5'
23574 3' -59.9 NC_005261.1 + 103498 0.7 0.495972
Target:  5'- -gACGUCGUCGGCg-CCG-CggaCGGCGg -3'
miRNA:   3'- ugUGCAGCAGCCGgaGGCaGa--GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 102453 0.68 0.631522
Target:  5'- gGCGCccgCG--GGCCUCCuGUCUCGGCc -3'
miRNA:   3'- -UGUGca-GCagCCGGAGG-CAGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 101522 0.66 0.766565
Target:  5'- cGCccuCGUCG-CGGUCgcgcgCCGcCUCGGCc -3'
miRNA:   3'- -UGu--GCAGCaGCCGGa----GGCaGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 101428 0.74 0.322589
Target:  5'- gGCACGUagCGcCGGCCggcgCaaaGUCUCGGCGc -3'
miRNA:   3'- -UGUGCA--GCaGCCGGa---Gg--CAGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 101423 0.71 0.47756
Target:  5'- uCACGaCGUCGGCCgCCGaggCGGCGc -3'
miRNA:   3'- uGUGCaGCAGCCGGaGGCagaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 99762 0.67 0.669056
Target:  5'- aGCACGUCGgacggggagaggCGGCCcgggUCCcaGUCgCGGCGc -3'
miRNA:   3'- -UGUGCAGCa-----------GCCGG----AGG--CAGaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 98985 0.67 0.680845
Target:  5'- aGCACGUCGuccUCGGCaauCUUcagCGUCgcgagCGGCGg -3'
miRNA:   3'- -UGUGCAGC---AGCCG---GAG---GCAGa----GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 96285 0.66 0.757376
Target:  5'- cGCugG-CG-CGGCUUCgGcCUCGGCc -3'
miRNA:   3'- -UGugCaGCaGCCGGAGgCaGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 94613 0.66 0.757376
Target:  5'- cGCGCGcccUCGcCGccGCCggcgCCGUCgUCGGCGc -3'
miRNA:   3'- -UGUGC---AGCaGC--CGGa---GGCAG-AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 93985 0.68 0.661174
Target:  5'- cCGCGgCGUCGGCCgCgCG-CUgGGCGg -3'
miRNA:   3'- uGUGCaGCAGCCGGaG-GCaGAgCCGC- -5'
23574 3' -59.9 NC_005261.1 + 93720 0.73 0.36492
Target:  5'- uCGuCGUCGUCGGCggcggcagcgcgcgCUUCGUaCUCGGCGg -3'
miRNA:   3'- uGU-GCAGCAGCCG--------------GAGGCA-GAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.