miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 5' -56.3 NC_005261.1 + 78853 0.66 0.875838
Target:  5'- gGCGcCGUGGCgCGGGcgcuGGCGGgcGAc -3'
miRNA:   3'- aUGC-GCAUCGgGUCCu---UCGCCuaCUc -5'
23574 5' -56.3 NC_005261.1 + 53835 0.66 0.875838
Target:  5'- cUGCGCGagcuggAGCUCgAGGcGGCGGccGAGg -3'
miRNA:   3'- -AUGCGCa-----UCGGG-UCCuUCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 120883 0.66 0.875838
Target:  5'- cUGgGCGggguGCCCGGGcgGGGCGGGagcUGGGc -3'
miRNA:   3'- -AUgCGCau--CGGGUCC--UUCGCCU---ACUC- -5'
23574 5' -56.3 NC_005261.1 + 85582 0.66 0.875838
Target:  5'- cGCGCGgGGCC--GGggGCGGA-GAc -3'
miRNA:   3'- aUGCGCaUCGGguCCuuCGCCUaCUc -5'
23574 5' -56.3 NC_005261.1 + 30936 0.66 0.875838
Target:  5'- gGCGC--AGCCCcucGGggGCGGGccucGAGg -3'
miRNA:   3'- aUGCGcaUCGGGu--CCuuCGCCUa---CUC- -5'
23574 5' -56.3 NC_005261.1 + 68575 0.66 0.875105
Target:  5'- aGCGCGUcgccgccgaggcgGGCCgCGGGA-GCGGGgccgacggcgUGGGg -3'
miRNA:   3'- aUGCGCA-------------UCGG-GUCCUuCGCCU----------ACUC- -5'
23574 5' -56.3 NC_005261.1 + 133544 0.66 0.869168
Target:  5'- gGCGCGcagcgcagcaugcuGCUCGGGggGCGGAcGGc -3'
miRNA:   3'- aUGCGCau------------CGGGUCCuuCGCCUaCUc -5'
23574 5' -56.3 NC_005261.1 + 50298 0.66 0.868416
Target:  5'- gGCGCGcGGCuCCAGGcccCGGGUGGc -3'
miRNA:   3'- aUGCGCaUCG-GGUCCuucGCCUACUc -5'
23574 5' -56.3 NC_005261.1 + 61877 0.66 0.868416
Target:  5'- cACGCGc-GCgCGGGGAGgGGAgGGGg -3'
miRNA:   3'- aUGCGCauCGgGUCCUUCgCCUaCUC- -5'
23574 5' -56.3 NC_005261.1 + 76520 0.66 0.868416
Target:  5'- gAUGgGgggGGCacaCGGGcGGGCGGAUGGGg -3'
miRNA:   3'- aUGCgCa--UCGg--GUCC-UUCGCCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 53782 0.66 0.868416
Target:  5'- aGCGCGUggcugcgcGGCCCGGG-GGCuGGucgccgGAGg -3'
miRNA:   3'- aUGCGCA--------UCGGGUCCuUCG-CCua----CUC- -5'
23574 5' -56.3 NC_005261.1 + 103084 0.66 0.860777
Target:  5'- aUGCGCGUGcuuGCgCCGcGGggGCGGGg--- -3'
miRNA:   3'- -AUGCGCAU---CG-GGU-CCuuCGCCUacuc -5'
23574 5' -56.3 NC_005261.1 + 135873 0.66 0.860777
Target:  5'- gGCGCGUGGCCU-GGAugucgcagaucGCGGAccccGAGg -3'
miRNA:   3'- aUGCGCAUCGGGuCCUu----------CGCCUa---CUC- -5'
23574 5' -56.3 NC_005261.1 + 114123 0.66 0.860777
Target:  5'- -cCGCcucgGGCCCGGGGugggcaGGCGGGggUGGGg -3'
miRNA:   3'- auGCGca--UCGGGUCCU------UCGCCU--ACUC- -5'
23574 5' -56.3 NC_005261.1 + 64760 0.66 0.860777
Target:  5'- cGCGcCGcGGCCCAGGGggGGCGcGcgGAc -3'
miRNA:   3'- aUGC-GCaUCGGGUCCU--UCGC-CuaCUc -5'
23574 5' -56.3 NC_005261.1 + 13073 0.66 0.860777
Target:  5'- gGCGCGUccgccGGCCCGucGGcGGGCGGcgGGc -3'
miRNA:   3'- aUGCGCA-----UCGGGU--CC-UUCGCCuaCUc -5'
23574 5' -56.3 NC_005261.1 + 102184 0.66 0.860777
Target:  5'- gGCGCGgugGGCUgCGGGucGCGGGguaGGGg -3'
miRNA:   3'- aUGCGCa--UCGG-GUCCuuCGCCUa--CUC- -5'
23574 5' -56.3 NC_005261.1 + 38347 0.66 0.860777
Target:  5'- gGCGCGcacGCCCAGcgggccuuuGggGCGGccGGGa -3'
miRNA:   3'- aUGCGCau-CGGGUC---------CuuCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 31356 0.66 0.860777
Target:  5'- gGCGCGUGGCCU-GGAugucgcagaucGCGGAccccGAGg -3'
miRNA:   3'- aUGCGCAUCGGGuCCUu----------CGCCUa---CUC- -5'
23574 5' -56.3 NC_005261.1 + 75827 0.66 0.860777
Target:  5'- gGCGCGgccgcGCCCGGGGAGgGGc---- -3'
miRNA:   3'- aUGCGCau---CGGGUCCUUCgCCuacuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.