miRNA display CGI


Results 61 - 80 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 107164 0.66 0.891136
Target:  5'- aCGCGGGCgggcagcgGCgGCUCCcGCcGCGCUGg -3'
miRNA:   3'- aGUGCUUGaa------CG-CGAGGuCG-UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 8104 0.66 0.910415
Target:  5'- -gGCGGACggcGCGCggCGGCuCGCCa -3'
miRNA:   3'- agUGCUUGaa-CGCGagGUCGuGCGGc -5'
23575 5' -55.7 NC_005261.1 + 52014 0.66 0.897799
Target:  5'- gCACcGGCUgcccCGgUUCGGCGCGCCGa -3'
miRNA:   3'- aGUGcUUGAac--GCgAGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 78702 0.66 0.904226
Target:  5'- gCGCGGuggcgGCgggGCuGCUCCAGgGCGCgCGu -3'
miRNA:   3'- aGUGCU-----UGaa-CG-CGAGGUCgUGCG-GC- -5'
23575 5' -55.7 NC_005261.1 + 115570 0.66 0.904226
Target:  5'- aCuCGGGCgccgcccagGCGCcgCCAGCGCGUCu -3'
miRNA:   3'- aGuGCUUGaa-------CGCGa-GGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 17140 0.66 0.910415
Target:  5'- gCACGGcCUggagGCGCUggCGGC-CGCCGg -3'
miRNA:   3'- aGUGCUuGAa---CGCGAg-GUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 69470 0.66 0.904226
Target:  5'- aCACGGcgGCUccgcgGCGCcCCGGCGggcgcuucuuccCGCCGg -3'
miRNA:   3'- aGUGCU--UGAa----CGCGaGGUCGU------------GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 71362 0.66 0.897799
Target:  5'- cCugGAGCUUGgGCUCUcgguGGCGUGCg- -3'
miRNA:   3'- aGugCUUGAACgCGAGG----UCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 100014 0.66 0.904226
Target:  5'- gCACGGugaGCgaggUGUugaGCagCAGCACGCCGc -3'
miRNA:   3'- aGUGCU---UGa---ACG---CGagGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 74746 0.66 0.910415
Target:  5'- -gGCGGAcCUUGCGUacuUCC-GCuCGCCGu -3'
miRNA:   3'- agUGCUU-GAACGCG---AGGuCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 7660 0.66 0.877119
Target:  5'- gCGCGGcggcGCUUcCGC-CCGGCGgGCCGc -3'
miRNA:   3'- aGUGCU----UGAAcGCGaGGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 41630 0.66 0.897799
Target:  5'- cCACGcGCgacGUGCUgCGGCagaGCGCCGc -3'
miRNA:   3'- aGUGCuUGaa-CGCGAgGUCG---UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 95871 0.66 0.904226
Target:  5'- gUACG--UUUGCGCggCCAGCcCGCCc -3'
miRNA:   3'- aGUGCuuGAACGCGa-GGUCGuGCGGc -5'
23575 5' -55.7 NC_005261.1 + 123543 0.66 0.910415
Target:  5'- gCGCGAGCgugcccucGCGCaCCGucaCACGCCGg -3'
miRNA:   3'- aGUGCUUGaa------CGCGaGGUc--GUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 105745 0.66 0.910415
Target:  5'- cCACGAACUcGCGCgcggggaCCugggugcucagGGCGCGCUc -3'
miRNA:   3'- aGUGCUUGAaCGCGa------GG-----------UCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 112402 0.66 0.910415
Target:  5'- -aGCGAGCggcucUGUUCCGGCGCGgCGc -3'
miRNA:   3'- agUGCUUGaac--GCGAGGUCGUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 83146 0.66 0.891136
Target:  5'- gUCGCGGACgcgagucUGCGCaugccUUCGGCG-GCCGa -3'
miRNA:   3'- -AGUGCUUGa------ACGCG-----AGGUCGUgCGGC- -5'
23575 5' -55.7 NC_005261.1 + 134806 0.66 0.910415
Target:  5'- cCugGAcGCUggcccgcGCGCUCuuCAGCcCGCCGg -3'
miRNA:   3'- aGugCU-UGAa------CGCGAG--GUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 98518 0.66 0.910415
Target:  5'- gUACGGGCagGCGCgagaUCCGGCcgguaggcuGCGCCc -3'
miRNA:   3'- aGUGCUUGaaCGCG----AGGUCG---------UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 80192 0.66 0.897799
Target:  5'- aUCACGcGGCc-GCGCUCCcuggAGCugcCGCCGc -3'
miRNA:   3'- -AGUGC-UUGaaCGCGAGG----UCGu--GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.