miRNA display CGI


Results 81 - 100 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 97407 0.72 0.574117
Target:  5'- cCGCGGGCUUG-GCg--GGCGCGCCGg -3'
miRNA:   3'- aGUGCUUGAACgCGaggUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 81580 0.72 0.574117
Target:  5'- uUCugGAAga---GCUCCAGCGCGCCc -3'
miRNA:   3'- -AGugCUUgaacgCGAGGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 80507 0.72 0.584345
Target:  5'- aCACGuuCUUGCGCUUgGGCAC-CCa -3'
miRNA:   3'- aGUGCuuGAACGCGAGgUCGUGcGGc -5'
23575 5' -55.7 NC_005261.1 + 132748 0.72 0.584345
Target:  5'- cUCAaGGGCaucGCGCgccuugUCCAGCACGCCGu -3'
miRNA:   3'- -AGUgCUUGaa-CGCG------AGGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 67962 0.72 0.584345
Target:  5'- gUCAUGGACaucGUGCUCaucgcggacaAGCGCGCCGa -3'
miRNA:   3'- -AGUGCUUGaa-CGCGAGg---------UCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 11948 0.72 0.584345
Target:  5'- cCGCGGcggcucgcccgGCgcGCGCUCCAGCGCagcaGCCGc -3'
miRNA:   3'- aGUGCU-----------UGaaCGCGAGGUCGUG----CGGC- -5'
23575 5' -55.7 NC_005261.1 + 108388 0.72 0.584345
Target:  5'- cCGCGccCgcGCGCUCCAGCagccGCGCCa -3'
miRNA:   3'- aGUGCuuGaaCGCGAGGUCG----UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 108200 0.72 0.5905
Target:  5'- gCGCGAgaGCUgcgccagcacggcGCGCUCCAGCAUGgCGc -3'
miRNA:   3'- aGUGCU--UGAa------------CGCGAGGUCGUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 101003 0.72 0.594609
Target:  5'- cCGCcAGCc-GCGCgUCCAGCGCGCCu -3'
miRNA:   3'- aGUGcUUGaaCGCG-AGGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 106118 0.72 0.594609
Target:  5'- gUCGCcGGCgcGCGCgcgCCGGCaACGCCGg -3'
miRNA:   3'- -AGUGcUUGaaCGCGa--GGUCG-UGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 42425 0.72 0.594609
Target:  5'- cCGCGAGCccccgccgGCGCgcggcuagCAGCGCGCCGg -3'
miRNA:   3'- aGUGCUUGaa------CGCGag------GUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 58906 0.72 0.594609
Target:  5'- gCGCGccAGCgcGCGCaCCAGCGCGCCc -3'
miRNA:   3'- aGUGC--UUGaaCGCGaGGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 131748 0.72 0.598722
Target:  5'- aCGCGGACggcacgccggccgGCGCggCgGGCGCGCCGc -3'
miRNA:   3'- aGUGCUUGaa-----------CGCGa-GgUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 71891 0.72 0.6049
Target:  5'- gCACGAAaaaGUGCUCCGcGC-CGCCGg -3'
miRNA:   3'- aGUGCUUgaaCGCGAGGU-CGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 52285 0.72 0.6049
Target:  5'- gUCACGAcg--GCGgUCCAGC-CGCCa -3'
miRNA:   3'- -AGUGCUugaaCGCgAGGUCGuGCGGc -5'
23575 5' -55.7 NC_005261.1 + 58992 0.72 0.6049
Target:  5'- cCACGGGCggcggUGCGCcgggcucgcCCAGCGgCGCCGc -3'
miRNA:   3'- aGUGCUUGa----ACGCGa--------GGUCGU-GCGGC- -5'
23575 5' -55.7 NC_005261.1 + 83314 0.72 0.6049
Target:  5'- cUCGCGGGCgaGUGCUCgCuacGCGCGCUGc -3'
miRNA:   3'- -AGUGCUUGaaCGCGAG-Gu--CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 101466 0.72 0.6049
Target:  5'- gCACGGGCcgGCGUgcaggggcgCCAGCugGCCu -3'
miRNA:   3'- aGUGCUUGaaCGCGa--------GGUCGugCGGc -5'
23575 5' -55.7 NC_005261.1 + 69631 0.72 0.6049
Target:  5'- gCACG-GCgUGCGCUaCCuGCGCGCCc -3'
miRNA:   3'- aGUGCuUGaACGCGA-GGuCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 41767 0.71 0.615212
Target:  5'- cCACGAGCgcgagGUGCUCUuccgucacgGGCAgGCCGu -3'
miRNA:   3'- aGUGCUUGaa---CGCGAGG---------UCGUgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.