miRNA display CGI


Results 61 - 80 of 597 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 5' -55.7 NC_005261.1 + 37937 0.74 0.48468
Target:  5'- aCGCGGACUuuggggccuucUGcCGCUucgugcgccaCCGGCGCGCCGa -3'
miRNA:   3'- aGUGCUUGA-----------AC-GCGA----------GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 134442 0.74 0.48468
Target:  5'- gCGCGAGCUggcggaccgcUGCGCUgCGGCcUGCCGc -3'
miRNA:   3'- aGUGCUUGA----------ACGCGAgGUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 90552 0.72 0.573097
Target:  5'- cCGCGGgcggccgugcugcGCUcgGCGCUgCGGCugGCCGu -3'
miRNA:   3'- aGUGCU-------------UGAa-CGCGAgGUCGugCGGC- -5'
23575 5' -55.7 NC_005261.1 + 81580 0.72 0.574117
Target:  5'- uUCugGAAga---GCUCCAGCGCGCCc -3'
miRNA:   3'- -AGugCUUgaacgCGAGGUCGUGCGGc -5'
23575 5' -55.7 NC_005261.1 + 49745 0.72 0.574117
Target:  5'- --uCGAGCgcggcGCGCUCCGGCGCGgCa -3'
miRNA:   3'- aguGCUUGaa---CGCGAGGUCGUGCgGc -5'
23575 5' -55.7 NC_005261.1 + 56938 0.72 0.574117
Target:  5'- gCACGGACgugcgcgccGCGCUCCGGCucGCGCa- -3'
miRNA:   3'- aGUGCUUGaa-------CGCGAGGUCG--UGCGgc -5'
23575 5' -55.7 NC_005261.1 + 67962 0.72 0.584345
Target:  5'- gUCAUGGACaucGUGCUCaucgcggacaAGCGCGCCGa -3'
miRNA:   3'- -AGUGCUUGaa-CGCGAGg---------UCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 42425 0.72 0.594609
Target:  5'- cCGCGAGCccccgccgGCGCgcggcuagCAGCGCGCCGg -3'
miRNA:   3'- aGUGCUUGaa------CGCGag------GUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 101466 0.72 0.6049
Target:  5'- gCACGGGCcgGCGUgcaggggcgCCAGCugGCCu -3'
miRNA:   3'- aGUGCUUGaaCGCGa--------GGUCGugCGGc -5'
23575 5' -55.7 NC_005261.1 + 83314 0.72 0.6049
Target:  5'- cUCGCGGGCgaGUGCUCgCuacGCGCGCUGc -3'
miRNA:   3'- -AGUGCUUGaaCGCGAG-Gu--CGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 79078 0.72 0.563931
Target:  5'- -gGCGGGCgccGCGCgCCcggGGCGCGCCGg -3'
miRNA:   3'- agUGCUUGaa-CGCGaGG---UCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 100344 0.73 0.553793
Target:  5'- gCAUGGccaGCUcGgGCUCCAGCACGCg- -3'
miRNA:   3'- aGUGCU---UGAaCgCGAGGUCGUGCGgc -5'
23575 5' -55.7 NC_005261.1 + 13670 0.74 0.490452
Target:  5'- gCGCGAGCg-GCGCgccugggagauggCCGGUACGCCGc -3'
miRNA:   3'- aGUGCUUGaaCGCGa------------GGUCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 21009 0.73 0.504042
Target:  5'- -gGCGGACUcgGCGC-CCaggcagcgGGCGCGCCGg -3'
miRNA:   3'- agUGCUUGAa-CGCGaGG--------UCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 33881 0.73 0.513849
Target:  5'- cUCGCGGGCggcgcUGCGCgacggCCGGC-CGCUGg -3'
miRNA:   3'- -AGUGCUUGa----ACGCGa----GGUCGuGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 5449 0.73 0.523733
Target:  5'- -gGCGAAgggGCGCUCCAGCAUGaCGg -3'
miRNA:   3'- agUGCUUgaaCGCGAGGUCGUGCgGC- -5'
23575 5' -55.7 NC_005261.1 + 7706 0.73 0.523733
Target:  5'- -gACGAGCgggcGCGCUUCGGCcaGCGCCu -3'
miRNA:   3'- agUGCUUGaa--CGCGAGGUCG--UGCGGc -5'
23575 5' -55.7 NC_005261.1 + 108703 0.73 0.523733
Target:  5'- cCGCGAGCUUcGCGCUCUgcAGcCAgGCCa -3'
miRNA:   3'- aGUGCUUGAA-CGCGAGG--UC-GUgCGGc -5'
23575 5' -55.7 NC_005261.1 + 65531 0.73 0.533688
Target:  5'- gCGCGAcGCUgGCGgaCCuGGCGCGCCGg -3'
miRNA:   3'- aGUGCU-UGAaCGCgaGG-UCGUGCGGC- -5'
23575 5' -55.7 NC_005261.1 + 51902 0.73 0.543711
Target:  5'- aCAUGGAC--GCGCUgaaguacguggCCAGCACGCUGg -3'
miRNA:   3'- aGUGCUUGaaCGCGA-----------GGUCGUGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.