miRNA display CGI


Results 41 - 60 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 35405 0.66 0.962547
Target:  5'- -cGCGGCgCGAGGcgcagaccGGCGCGCGGcgGCUg- -3'
miRNA:   3'- acUGCCG-GCUCU--------UCGUGUGCU--UGAag -5'
23576 3' -52.6 NC_005261.1 + 134859 0.66 0.975944
Target:  5'- cUGGCGGCCGcgcucgcggcccugaAGGccGGCGCGcCGGGCg-- -3'
miRNA:   3'- -ACUGCCGGC---------------UCU--UCGUGU-GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 53048 0.66 0.965967
Target:  5'- cGGC-GCCGuGAAGCGCuucuCGGACg-- -3'
miRNA:   3'- aCUGcCGGCuCUUCGUGu---GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 88548 0.66 0.972135
Target:  5'- aGACGaCCGAGuacccGAGCGCcgGCGAcgcgucccGCUUCg -3'
miRNA:   3'- aCUGCcGGCUC-----UUCGUG--UGCU--------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 21587 0.66 0.962547
Target:  5'- cGGCGGC----GGGCGCGCGGGCcUCg -3'
miRNA:   3'- aCUGCCGgcucUUCGUGUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 22780 0.66 0.972135
Target:  5'- cGA-GGCgGAGGAGUccggccgcgaGCGCGAGCUc- -3'
miRNA:   3'- aCUgCCGgCUCUUCG----------UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 98809 0.66 0.974897
Target:  5'- gGACGcGCCGGGGgacgggguGGCcGCugGGGCUcgggUCg -3'
miRNA:   3'- aCUGC-CGGCUCU--------UCG-UGugCUUGA----AG- -5'
23576 3' -52.6 NC_005261.1 + 135813 0.66 0.974897
Target:  5'- cGACGcGCCguucGAGGAGUACAUcccugGGGCUUg -3'
miRNA:   3'- aCUGC-CGG----CUCUUCGUGUG-----CUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 91264 0.66 0.972135
Target:  5'- gGGCGGCgGcAGcGGCgacgGCGCGGACUg- -3'
miRNA:   3'- aCUGCCGgC-UCuUCG----UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 114374 0.66 0.969161
Target:  5'- cGGUGGCCGAGAAGUACGu--GCUc- -3'
miRNA:   3'- aCUGCCGGCUCUUCGUGUgcuUGAag -5'
23576 3' -52.6 NC_005261.1 + 93494 0.66 0.974897
Target:  5'- -cGCGGC---GAAGCGCGCGAACcgCg -3'
miRNA:   3'- acUGCCGgcuCUUCGUGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 97120 0.66 0.969161
Target:  5'- -cGCGGCCG-GAGGCGcCGCGGccacGCUc- -3'
miRNA:   3'- acUGCCGGCuCUUCGU-GUGCU----UGAag -5'
23576 3' -52.6 NC_005261.1 + 63009 0.66 0.972135
Target:  5'- cGGCGGCCGcGcc-CGCGCGGGCg-- -3'
miRNA:   3'- aCUGCCGGCuCuucGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 30242 0.66 0.974897
Target:  5'- cGACGGCgGGcuGGAGCAgACGAuccgccACUg- -3'
miRNA:   3'- aCUGCCGgCU--CUUCGUgUGCU------UGAag -5'
23576 3' -52.6 NC_005261.1 + 125897 0.66 0.974897
Target:  5'- cGGCGGCCGcgccGGccAAGCGCGCGcccgccGGCUa- -3'
miRNA:   3'- aCUGCCGGC----UC--UUCGUGUGC------UUGAag -5'
23576 3' -52.6 NC_005261.1 + 5141 0.66 0.972135
Target:  5'- uUGACGGCgGccuugcgcucgaAGAAGCugACGuACUc- -3'
miRNA:   3'- -ACUGCCGgC------------UCUUCGugUGCuUGAag -5'
23576 3' -52.6 NC_005261.1 + 85940 0.66 0.974897
Target:  5'- aUGGCGGCCaGGgcGC-CGCGGaaGCUg- -3'
miRNA:   3'- -ACUGCCGGcUCuuCGuGUGCU--UGAag -5'
23576 3' -52.6 NC_005261.1 + 106240 0.66 0.974897
Target:  5'- cGGCGGCaCGGGcaccgcGGUGCGCGGGCc-- -3'
miRNA:   3'- aCUGCCG-GCUCu-----UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 37239 0.66 0.974897
Target:  5'- -cGCGGCUGGcGGAGCGCgGCGAcgcGCUg- -3'
miRNA:   3'- acUGCCGGCU-CUUCGUG-UGCU---UGAag -5'
23576 3' -52.6 NC_005261.1 + 104355 0.66 0.974897
Target:  5'- gUGACGcGCCG-GAGGCGgGCGGc---- -3'
miRNA:   3'- -ACUGC-CGGCuCUUCGUgUGCUugaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.