miRNA display CGI


Results 41 - 60 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 128889 0.67 0.958895
Target:  5'- cGGgGGCCGGGuGGgAgGCGGGCgUCg -3'
miRNA:   3'- aCUgCCGGCUCuUCgUgUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 114374 0.66 0.969161
Target:  5'- cGGUGGCCGAGAAGUACGu--GCUc- -3'
miRNA:   3'- aCUGCCGGCUCUUCGUGUgcuUGAag -5'
23576 3' -52.6 NC_005261.1 + 85940 0.66 0.974897
Target:  5'- aUGGCGGCCaGGgcGC-CGCGGaaGCUg- -3'
miRNA:   3'- -ACUGCCGGcUCuuCGuGUGCU--UGAag -5'
23576 3' -52.6 NC_005261.1 + 39784 0.66 0.962547
Target:  5'- gGACGucGCCGGGggGCgGCGCGGcCg-- -3'
miRNA:   3'- aCUGC--CGGCUCuuCG-UGUGCUuGaag -5'
23576 3' -52.6 NC_005261.1 + 93494 0.66 0.974897
Target:  5'- -cGCGGC---GAAGCGCGCGAACcgCg -3'
miRNA:   3'- acUGCCGgcuCUUCGUGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 129582 0.67 0.946498
Target:  5'- aGGCGGCCGcgcgccgcGGGA-CACGCGGcaAUUUCg -3'
miRNA:   3'- aCUGCCGGC--------UCUUcGUGUGCU--UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 134222 0.66 0.974897
Target:  5'- cGGCGGCCGGcagcgucggcGuGGCGCACGcGCc-- -3'
miRNA:   3'- aCUGCCGGCU----------CuUCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 127383 0.67 0.950448
Target:  5'- uUGGCGGCggCGAGGAgcccggcgcccucGCACACGAGg--- -3'
miRNA:   3'- -ACUGCCG--GCUCUU-------------CGUGUGCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 34349 0.67 0.950875
Target:  5'- gGGCGGCCGAcGggGCcgggcgccGCGCGGcgccGCg-- -3'
miRNA:   3'- aCUGCCGGCU-CuuCG--------UGUGCU----UGaag -5'
23576 3' -52.6 NC_005261.1 + 131722 0.67 0.955006
Target:  5'- aGGCGGCgcgcuucggUGGGugcuGCACGCGGACggCa -3'
miRNA:   3'- aCUGCCG---------GCUCuu--CGUGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 68090 0.67 0.955006
Target:  5'- cGGgGGCgGGGAGGCcgugaaguucggGCugGAGCUg- -3'
miRNA:   3'- aCUgCCGgCUCUUCG------------UGugCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 136826 0.67 0.958895
Target:  5'- aGACGGCgcccccgcgCGuGAGGUagaGCAUGAACUUg -3'
miRNA:   3'- aCUGCCG---------GCuCUUCG---UGUGCUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 97198 0.67 0.958895
Target:  5'- -cGCGGCCG-GAAGCGcCGCGGccacGCUc- -3'
miRNA:   3'- acUGCCGGCuCUUCGU-GUGCU----UGAag -5'
23576 3' -52.6 NC_005261.1 + 14030 0.66 0.965967
Target:  5'- cGAUGGCCaGcGggGCcAUGCGAGCggUCc -3'
miRNA:   3'- aCUGCCGG-CuCuuCG-UGUGCUUGa-AG- -5'
23576 3' -52.6 NC_005261.1 + 66553 0.66 0.965967
Target:  5'- cUGGuCGGCCGuGccGCGCuCGAACgagUCc -3'
miRNA:   3'- -ACU-GCCGGCuCuuCGUGuGCUUGa--AG- -5'
23576 3' -52.6 NC_005261.1 + 42673 0.66 0.969161
Target:  5'- cGGCGGCCGGGccGC-CGCcGGCa-- -3'
miRNA:   3'- aCUGCCGGCUCuuCGuGUGcUUGaag -5'
23576 3' -52.6 NC_005261.1 + 86945 0.66 0.969161
Target:  5'- cGGCGGgcuggucaaagaCCGuGAAGCACACGuccgGCggCa -3'
miRNA:   3'- aCUGCC------------GGCuCUUCGUGUGCu---UGaaG- -5'
23576 3' -52.6 NC_005261.1 + 97120 0.66 0.969161
Target:  5'- -cGCGGCCG-GAGGCGcCGCGGccacGCUc- -3'
miRNA:   3'- acUGCCGGCuCUUCGU-GUGCU----UGAag -5'
23576 3' -52.6 NC_005261.1 + 5873 0.66 0.972135
Target:  5'- cGACGGa-GAGAGGCugGCuGGCUc- -3'
miRNA:   3'- aCUGCCggCUCUUCGugUGcUUGAag -5'
23576 3' -52.6 NC_005261.1 + 1723 0.66 0.974897
Target:  5'- cGGCGGCaCGGGcaccgcGGUGCGCGGGCc-- -3'
miRNA:   3'- aCUGCCG-GCUCu-----UCGUGUGCUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.