miRNA display CGI


Results 81 - 100 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 91302 0.66 0.755481
Target:  5'- gCCGCgugAGCACCauccuggacaGCCccgcgugcgUGCGCGGGCuCUGg -3'
miRNA:   3'- -GGCG---UCGUGG----------UGG---------AUGUGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 14268 0.66 0.774016
Target:  5'- uUGUAGCGCuCGCgga-GCGGGCGCUGc -3'
miRNA:   3'- gGCGUCGUG-GUGgaugUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 106341 0.66 0.774016
Target:  5'- gCCGCGcGUaaGCgGCCUcgGCGCGcgcgaaGGCGCCGg -3'
miRNA:   3'- -GGCGU-CG--UGgUGGA--UGUGC------CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 68726 0.66 0.755481
Target:  5'- uCCgGCAGCccGCCGCCgGCGuacaGGuGCACCa -3'
miRNA:   3'- -GG-CGUCG--UGGUGGaUGUg---CC-CGUGGc -5'
23576 5' -59.1 NC_005261.1 + 13882 0.66 0.755481
Target:  5'- gCGCAGCaauGCCGCCcAC-UGaGGCGCUGc -3'
miRNA:   3'- gGCGUCG---UGGUGGaUGuGC-CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 88044 0.66 0.755481
Target:  5'- gCUGCuGCACCGgCUGCugcgGCGGuGC-CCGc -3'
miRNA:   3'- -GGCGuCGUGGUgGAUG----UGCC-CGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 64116 0.66 0.764805
Target:  5'- gCGcCAGgACCACCggguC-CGGGC-CCGg -3'
miRNA:   3'- gGC-GUCgUGGUGGau--GuGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 65094 0.66 0.792065
Target:  5'- -gGCGGCGCgaGCCcgGCcCGGGgACCGc -3'
miRNA:   3'- ggCGUCGUGg-UGGa-UGuGCCCgUGGC- -5'
23576 5' -59.1 NC_005261.1 + 18143 0.66 0.783105
Target:  5'- gCGCGcGUGCCgaGCCUcCACGGGguaGCCGu -3'
miRNA:   3'- gGCGU-CGUGG--UGGAuGUGCCCg--UGGC- -5'
23576 5' -59.1 NC_005261.1 + 70760 0.66 0.764805
Target:  5'- gCCGCGG-GCUuCCUguACGCGGGCgugcgggcggACCGg -3'
miRNA:   3'- -GGCGUCgUGGuGGA--UGUGCCCG----------UGGC- -5'
23576 5' -59.1 NC_005261.1 + 117946 0.66 0.752663
Target:  5'- gCCGCAagcGCGCCcCCgcgACACGacccggcgguucucGGCGCCc -3'
miRNA:   3'- -GGCGU---CGUGGuGGa--UGUGC--------------CCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 49123 0.66 0.792065
Target:  5'- gCGCAGUGCCACgcGCGCGccagcGCGCCc -3'
miRNA:   3'- gGCGUCGUGGUGgaUGUGCc----CGUGGc -5'
23576 5' -59.1 NC_005261.1 + 11216 0.66 0.774016
Target:  5'- cCUGCucgGGcCGCCGCCUGCGgCGGGguCgGc -3'
miRNA:   3'- -GGCG---UC-GUGGUGGAUGU-GCCCguGgC- -5'
23576 5' -59.1 NC_005261.1 + 22702 0.66 0.768503
Target:  5'- gCCGCcgauGCugCGCUcggugcagcagguggUGCGgGGGCugCGg -3'
miRNA:   3'- -GGCGu---CGugGUGG---------------AUGUgCCCGugGC- -5'
23576 5' -59.1 NC_005261.1 + 13768 0.66 0.792065
Target:  5'- aCGUgGGCGCC-CCUGa--GGGCACCc -3'
miRNA:   3'- gGCG-UCGUGGuGGAUgugCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 17265 0.66 0.792065
Target:  5'- gCgGCGGCACgCGCCc-CGCGgGGCGCg- -3'
miRNA:   3'- -GgCGUCGUG-GUGGauGUGC-CCGUGgc -5'
23576 5' -59.1 NC_005261.1 + 92830 0.66 0.774016
Target:  5'- gCCGCAGCAggcacgaCAgCUGCACgaacaGGGCGgccCCGa -3'
miRNA:   3'- -GGCGUCGUg------GUgGAUGUG-----CCCGU---GGC- -5'
23576 5' -59.1 NC_005261.1 + 19810 0.66 0.764805
Target:  5'- uCCGCGGCGgCgacaGCCaGCGCGgcugcGGCGCCc -3'
miRNA:   3'- -GGCGUCGUgG----UGGaUGUGC-----CCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 7993 0.66 0.783105
Target:  5'- gCCGCuGGCGCggCGCCUGaGCGGGCcgacgcucuuccGCCu -3'
miRNA:   3'- -GGCG-UCGUG--GUGGAUgUGCCCG------------UGGc -5'
23576 5' -59.1 NC_005261.1 + 86262 0.66 0.762019
Target:  5'- gCCGCGGU-CCAgCaGCGCGgcggcgucgucgguGGCGCCGg -3'
miRNA:   3'- -GGCGUCGuGGUgGaUGUGC--------------CCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.