miRNA display CGI


Results 81 - 100 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 8051 0.67 0.736529
Target:  5'- gCCGuCAGCucCCugCUGC-CGG-CGCCGc -3'
miRNA:   3'- -GGC-GUCGu-GGugGAUGuGCCcGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 8287 0.66 0.792065
Target:  5'- gCUGCAgauGUACCACUcgg-UGGGCGCCGu -3'
miRNA:   3'- -GGCGU---CGUGGUGGauguGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 8593 0.73 0.392932
Target:  5'- gCCGCcGCcaccguuGCCGCCUGCAaaGGCGCCc -3'
miRNA:   3'- -GGCGuCG-------UGGUGGAUGUgcCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 8918 0.83 0.088364
Target:  5'- aCGCGGCGCCAgCgcagGCGCgGGGCGCCGg -3'
miRNA:   3'- gGCGUCGUGGUgGa---UGUG-CCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 9037 0.66 0.792065
Target:  5'- -aGCAGCugCGCC-ACGCGcuGGcCugCGg -3'
miRNA:   3'- ggCGUCGugGUGGaUGUGC--CC-GugGC- -5'
23576 5' -59.1 NC_005261.1 + 9188 0.67 0.706491
Target:  5'- gCGCGGCagcgugggcgucuGCCGCgUAggcUACGGGCAgCCGc -3'
miRNA:   3'- gGCGUCG-------------UGGUGgAU---GUGCCCGU-GGC- -5'
23576 5' -59.1 NC_005261.1 + 9422 0.77 0.213323
Target:  5'- gCCGCAGCGcgagccCCGCCgcggGCcCGGGCGCCc -3'
miRNA:   3'- -GGCGUCGU------GGUGGa---UGuGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 9651 0.7 0.558259
Target:  5'- gCGgGGC-CCACUcGgGCGGGCGCCc -3'
miRNA:   3'- gGCgUCGuGGUGGaUgUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 9996 0.67 0.70747
Target:  5'- gCGCGGCcacccgcuuGCCACCcgAC-CGGGCggGCCu -3'
miRNA:   3'- gGCGUCG---------UGGUGGa-UGuGCCCG--UGGc -5'
23576 5' -59.1 NC_005261.1 + 10242 0.72 0.454233
Target:  5'- cCCGC-GCACuCGCCgcCGCGGGC-CUGg -3'
miRNA:   3'- -GGCGuCGUG-GUGGauGUGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 10427 0.7 0.519399
Target:  5'- -aGCGGC-CCGCCgcCGC-GGCGCCGg -3'
miRNA:   3'- ggCGUCGuGGUGGauGUGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 10488 0.73 0.402075
Target:  5'- cCCGCuGCACCGgCUuuuGCGCGcGGcCGCCGc -3'
miRNA:   3'- -GGCGuCGUGGUgGA---UGUGC-CC-GUGGC- -5'
23576 5' -59.1 NC_005261.1 + 10528 0.68 0.667908
Target:  5'- cCCGCGGCgcgcucgcugucGCCcccggcgcGCCUGC-CGGGC-CCa -3'
miRNA:   3'- -GGCGUCG------------UGG--------UGGAUGuGCCCGuGGc -5'
23576 5' -59.1 NC_005261.1 + 10533 0.68 0.657928
Target:  5'- gCGCAGCuccuccggcGCCGCCgggGCAgCGGcCGCCGc -3'
miRNA:   3'- gGCGUCG---------UGGUGGa--UGU-GCCcGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 11060 0.67 0.746053
Target:  5'- gCCGCccaGGCGCCGCCaGCGCGucuaGGgACgGg -3'
miRNA:   3'- -GGCG---UCGUGGUGGaUGUGC----CCgUGgC- -5'
23576 5' -59.1 NC_005261.1 + 11216 0.66 0.774016
Target:  5'- cCUGCucgGGcCGCCGCCUGCGgCGGGguCgGc -3'
miRNA:   3'- -GGCG---UC-GUGGUGGAUGU-GCCCguGgC- -5'
23576 5' -59.1 NC_005261.1 + 11428 0.66 0.774016
Target:  5'- aCGCAGaCGCCGCgCUgcucucggcagACGCagacgcgguaguGGGCGCCa -3'
miRNA:   3'- gGCGUC-GUGGUG-GA-----------UGUG------------CCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 11614 0.68 0.647928
Target:  5'- uCCGCA-CACCGCCcucccgccccCACGcGGCGCCc -3'
miRNA:   3'- -GGCGUcGUGGUGGau--------GUGC-CCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 11704 0.75 0.303004
Target:  5'- gCCGaGGCGCgGCggGCGCGGGCGCCc -3'
miRNA:   3'- -GGCgUCGUGgUGgaUGUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 11760 0.68 0.637915
Target:  5'- gCGCGGUACUACCgcgAgGCGaGcGCGCUGg -3'
miRNA:   3'- gGCGUCGUGGUGGa--UgUGC-C-CGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.