Results 21 - 40 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 29838 | 0.67 | 0.92047 |
Target: 5'- cGCCGAgcugcgcgcCGugCUCGcCGGCCGCGcgGc -3' miRNA: 3'- -UGGUU---------GCugGAGUaGUCGGCGCuaCu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 84953 | 0.66 | 0.926057 |
Target: 5'- cUCGGCGGCCgccgaggCGUCGGgcgcguCCGCGAUGc -3' miRNA: 3'- uGGUUGCUGGa------GUAGUC------GGCGCUACu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 49507 | 0.66 | 0.941327 |
Target: 5'- gGCCggUGACCUCcgaaaaGGUCGCGGg-- -3' miRNA: 3'- -UGGuuGCUGGAGuag---UCGGCGCUacu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 118057 | 0.66 | 0.945923 |
Target: 5'- cGCUGGCGGCCgcggCAgcggccgCAGCCGCGc--- -3' miRNA: 3'- -UGGUUGCUGGa---GUa------GUCGGCGCuacu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 53361 | 0.67 | 0.902228 |
Target: 5'- cGCUuuCGGCCgccgCccCGGCCGCGGUGu -3' miRNA: 3'- -UGGuuGCUGGa---GuaGUCGGCGCUACu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 86586 | 0.67 | 0.914635 |
Target: 5'- aGCCGGCGgcggcGCCguccuuggCGUCGGCCGCGc--- -3' miRNA: 3'- -UGGUUGC-----UGGa-------GUAGUCGGCGCuacu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 102678 | 0.66 | 0.931394 |
Target: 5'- cCCAGCG-CCgCGUCcGCCGCGGc-- -3' miRNA: 3'- uGGUUGCuGGaGUAGuCGGCGCUacu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 9539 | 0.66 | 0.945923 |
Target: 5'- cGCCGACGACCccccggaAGCCuGCGAcGAu -3' miRNA: 3'- -UGGUUGCUGGaguag--UCGG-CGCUaCU- -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 80853 | 0.67 | 0.919898 |
Target: 5'- uGCCAgccGCGcACCcCAggcgcgcUCAGCCGCGcgGGc -3' miRNA: 3'- -UGGU---UGC-UGGaGU-------AGUCGGCGCuaCU- -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 87608 | 0.66 | 0.945923 |
Target: 5'- uGCCGGCGACCaccgcgaCGUUGGgCGCGAa-- -3' miRNA: 3'- -UGGUUGCUGGa------GUAGUCgGCGCUacu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 84990 | 0.66 | 0.926057 |
Target: 5'- cGCCGGCGcACCcagugCAUgaCGGCCGCGGg-- -3' miRNA: 3'- -UGGUUGC-UGGa----GUA--GUCGGCGCUacu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 101084 | 0.67 | 0.92047 |
Target: 5'- cGCCcGCGGCCgccugCAgcgCGGCCGCGc--- -3' miRNA: 3'- -UGGuUGCUGGa----GUa--GUCGGCGCuacu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 72771 | 0.66 | 0.936484 |
Target: 5'- aGCaCGGCGGCCgcgcacgCGUCcggGGCCGCGGa-- -3' miRNA: 3'- -UG-GUUGCUGGa------GUAG---UCGGCGCUacu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 30042 | 0.66 | 0.941327 |
Target: 5'- gGCC-GCGGCCUgc-CGGCCGCGGc-- -3' miRNA: 3'- -UGGuUGCUGGAguaGUCGGCGCUacu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 122588 | 0.66 | 0.941327 |
Target: 5'- cGCCGcaGCGGCCUUGUacGCCGCGuUGu -3' miRNA: 3'- -UGGU--UGCUGGAGUAguCGGCGCuACu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 73207 | 0.66 | 0.945923 |
Target: 5'- gGCCccgGGCG-CCUCGagGGgCGCGGUGGc -3' miRNA: 3'- -UGG---UUGCuGGAGUagUCgGCGCUACU- -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 64662 | 0.67 | 0.895659 |
Target: 5'- cACCAGCca-CUCGUC-GCCGUGGUGc -3' miRNA: 3'- -UGGUUGcugGAGUAGuCGGCGCUACu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 90995 | 0.67 | 0.902228 |
Target: 5'- uACCu-CGGCCUCGUC-GCCGgcggcaagaugcUGAUGAa -3' miRNA: 3'- -UGGuuGCUGGAGUAGuCGGC------------GCUACU- -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 106528 | 0.67 | 0.908554 |
Target: 5'- cGCCAGCaccGCCUCcUCGGCgGCGGc-- -3' miRNA: 3'- -UGGUUGc--UGGAGuAGUCGgCGCUacu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 84287 | 0.67 | 0.914635 |
Target: 5'- cGCCGGCGGCCcCGgcccCGGCgGCGccGAa -3' miRNA: 3'- -UGGUUGCUGGaGUa---GUCGgCGCuaCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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