miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 5' -54.2 NC_005261.1 + 105227 0.66 0.945923
Target:  5'- gGCC-GCGGCCg---CGGCCGUGAUc- -3'
miRNA:   3'- -UGGuUGCUGGaguaGUCGGCGCUAcu -5'
23577 5' -54.2 NC_005261.1 + 102678 0.66 0.931394
Target:  5'- cCCAGCG-CCgCGUCcGCCGCGGc-- -3'
miRNA:   3'- uGGUUGCuGGaGUAGuCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 84953 0.66 0.926057
Target:  5'- cUCGGCGGCCgccgaggCGUCGGgcgcguCCGCGAUGc -3'
miRNA:   3'- uGGUUGCUGGa------GUAGUC------GGCGCUACu -5'
23577 5' -54.2 NC_005261.1 + 114486 1.09 0.003817
Target:  5'- aACCAACGACCUCAUCAGCCGCGAUGAg -3'
miRNA:   3'- -UGGUUGCUGGAGUAGUCGGCGCUACU- -5'
23577 5' -54.2 NC_005261.1 + 73207 0.66 0.945923
Target:  5'- gGCCccgGGCG-CCUCGagGGgCGCGGUGGc -3'
miRNA:   3'- -UGG---UUGCuGGAGUagUCgGCGCUACU- -5'
23577 5' -54.2 NC_005261.1 + 1978 0.66 0.945923
Target:  5'- cCCGACGGCCgggcCAUCGGCgGCc---- -3'
miRNA:   3'- uGGUUGCUGGa---GUAGUCGgCGcuacu -5'
23577 5' -54.2 NC_005261.1 + 122588 0.66 0.941327
Target:  5'- cGCCGcaGCGGCCUUGUacGCCGCGuUGu -3'
miRNA:   3'- -UGGU--UGCUGGAGUAguCGGCGCuACu -5'
23577 5' -54.2 NC_005261.1 + 101517 0.66 0.941327
Target:  5'- cCCGGCGcCCUCGUCgcGGUCGCGc--- -3'
miRNA:   3'- uGGUUGCuGGAGUAG--UCGGCGCuacu -5'
23577 5' -54.2 NC_005261.1 + 30042 0.66 0.941327
Target:  5'- gGCC-GCGGCCUgc-CGGCCGCGGc-- -3'
miRNA:   3'- -UGGuUGCUGGAguaGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 104108 0.66 0.936484
Target:  5'- uCCGcGCGACCg---CAGCCGCGcgGu -3'
miRNA:   3'- uGGU-UGCUGGaguaGUCGGCGCuaCu -5'
23577 5' -54.2 NC_005261.1 + 102051 0.66 0.936484
Target:  5'- cCCGucGCGAUgUgCAUCAGCCGCGucagcUGGc -3'
miRNA:   3'- uGGU--UGCUGgA-GUAGUCGGCGCu----ACU- -5'
23577 5' -54.2 NC_005261.1 + 49507 0.66 0.941327
Target:  5'- gGCCggUGACCUCcgaaaaGGUCGCGGg-- -3'
miRNA:   3'- -UGGuuGCUGGAGuag---UCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 87608 0.66 0.945923
Target:  5'- uGCCGGCGACCaccgcgaCGUUGGgCGCGAa-- -3'
miRNA:   3'- -UGGUUGCUGGa------GUAGUCgGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 72771 0.66 0.936484
Target:  5'- aGCaCGGCGGCCgcgcacgCGUCcggGGCCGCGGa-- -3'
miRNA:   3'- -UG-GUUGCUGGa------GUAG---UCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 9539 0.66 0.945923
Target:  5'- cGCCGACGACCccccggaAGCCuGCGAcGAu -3'
miRNA:   3'- -UGGUUGCUGGaguag--UCGG-CGCUaCU- -5'
23577 5' -54.2 NC_005261.1 + 116764 0.66 0.941327
Target:  5'- uGCgAACG-CCUUucugguauUCAGCCGCGAg-- -3'
miRNA:   3'- -UGgUUGCuGGAGu-------AGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 15754 0.66 0.936484
Target:  5'- gGCCGACcGCCUC----GCCGCGAUa- -3'
miRNA:   3'- -UGGUUGcUGGAGuaguCGGCGCUAcu -5'
23577 5' -54.2 NC_005261.1 + 84990 0.66 0.926057
Target:  5'- cGCCGGCGcACCcagugCAUgaCGGCCGCGGg-- -3'
miRNA:   3'- -UGGUUGC-UGGa----GUA--GUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 118057 0.66 0.945923
Target:  5'- cGCUGGCGGCCgcggCAgcggccgCAGCCGCGc--- -3'
miRNA:   3'- -UGGUUGCUGGa---GUa------GUCGGCGCuacu -5'
23577 5' -54.2 NC_005261.1 + 9360 0.66 0.945475
Target:  5'- cGCCGACGAuCCcCGggAGCCGCauugcgaGGUGAg -3'
miRNA:   3'- -UGGUUGCU-GGaGUagUCGGCG-------CUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.