miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23578 3' -49.1 NC_005261.1 + 136116 0.67 0.99565
Target:  5'- cGCUCggCGCgC---AGGGCGUgCUGCu -3'
miRNA:   3'- -CGAGaaGUGgGuuuUCCUGUAgGACG- -5'
23578 3' -49.1 NC_005261.1 + 135753 0.66 0.998161
Target:  5'- cGCUCUUC-CCCGAGcccuGGCGcCCgGCg -3'
miRNA:   3'- -CGAGAAGuGGGUUUuc--CUGUaGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 135351 0.69 0.980456
Target:  5'- aGCggUUCGCCCccGAGGGCcgCC-GCg -3'
miRNA:   3'- -CGagAAGUGGGuuUUCCUGuaGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 130700 0.68 0.986403
Target:  5'- uGCUCgagCACCUcgccGAGGACGUCaccuucgcgCUGCc -3'
miRNA:   3'- -CGAGaa-GUGGGuu--UUCCUGUAG---------GACG- -5'
23578 3' -49.1 NC_005261.1 + 129788 0.69 0.980456
Target:  5'- uUUUUUCGCCgCGAGGGGGCGcggUCUGUg -3'
miRNA:   3'- cGAGAAGUGG-GUUUUCCUGUa--GGACG- -5'
23578 3' -49.1 NC_005261.1 + 125396 0.74 0.856765
Target:  5'- aGUUCUUC-CCCGAcGAGGACucuUCCUucGCg -3'
miRNA:   3'- -CGAGAAGuGGGUU-UUCCUGu--AGGA--CG- -5'
23578 3' -49.1 NC_005261.1 + 120611 0.66 0.997365
Target:  5'- cCUCggCGCCgu--GGGGC-UCCUGCu -3'
miRNA:   3'- cGAGaaGUGGguuuUCCUGuAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 115054 0.66 0.997793
Target:  5'- cGCUCgcugUCGCCCcc--GGcGCG-CCUGCc -3'
miRNA:   3'- -CGAGa---AGUGGGuuuuCC-UGUaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 114983 0.68 0.986403
Target:  5'- aGCUC-UCGCCCGAGcAGGcCGgccCgCUGCa -3'
miRNA:   3'- -CGAGaAGUGGGUUU-UCCuGUa--G-GACG- -5'
23578 3' -49.1 NC_005261.1 + 114525 0.71 0.946751
Target:  5'- cGCUUgcCACCCGAccGGGCGggCCUcGCg -3'
miRNA:   3'- -CGAGaaGUGGGUUuuCCUGUa-GGA-CG- -5'
23578 3' -49.1 NC_005261.1 + 114167 1.16 0.004161
Target:  5'- aGCUCUUCACCCAAAAGGACAUCCUGCa -3'
miRNA:   3'- -CGAGAAGUGGGUUUUCCUGUAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 112551 0.66 0.99802
Target:  5'- uGCUCUucgaccgcuaccUCGCCUAccucgagggcugcGAGGGCGUCgUGUg -3'
miRNA:   3'- -CGAGA------------AGUGGGUu------------UUCCUGUAGgACG- -5'
23578 3' -49.1 NC_005261.1 + 111152 0.67 0.995921
Target:  5'- aGCUCaUCugCCuauugccgcccccuGAcuGGGGCuUCCUGCu -3'
miRNA:   3'- -CGAGaAGugGGu-------------UU--UCCUGuAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 110569 0.71 0.942029
Target:  5'- cUUCUUCuCCCAAAGGGGCcccucGUCCcgacgGCg -3'
miRNA:   3'- cGAGAAGuGGGUUUUCCUG-----UAGGa----CG- -5'
23578 3' -49.1 NC_005261.1 + 109717 0.66 0.997365
Target:  5'- aGCUCgaguuaCAUCCAGAucGGCAaccaCCUGCg -3'
miRNA:   3'- -CGAGaa----GUGGGUUUucCUGUa---GGACG- -5'
23578 3' -49.1 NC_005261.1 + 103993 0.67 0.996301
Target:  5'- -gUCUUCGCCCcAGAuGACGgccgcgUCUGCg -3'
miRNA:   3'- cgAGAAGUGGGuUUUcCUGUa-----GGACG- -5'
23578 3' -49.1 NC_005261.1 + 103606 0.66 0.997365
Target:  5'- cCUCcUCGCCUAucAGGGGC-UCCaGCg -3'
miRNA:   3'- cGAGaAGUGGGUu-UUCCUGuAGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 103459 0.66 0.99687
Target:  5'- gGCcgCcgCGCCCGucgccAGGGCGUCCaGCu -3'
miRNA:   3'- -CGa-GaaGUGGGUuu---UCCUGUAGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 100584 0.66 0.99687
Target:  5'- cCUCgUCGCCCAGGAGcGCcgCCacGCg -3'
miRNA:   3'- cGAGaAGUGGGUUUUCcUGuaGGa-CG- -5'
23578 3' -49.1 NC_005261.1 + 98380 0.72 0.914439
Target:  5'- uGC-CUgggCGCCCGGcGGGACAUCCa-- -3'
miRNA:   3'- -CGaGAa--GUGGGUUuUCCUGUAGGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.