miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23578 3' -49.1 NC_005261.1 + 21248 0.65 0.998417
Target:  5'- gGCUUUUCagggcguGCCgCAAcgagcacGAGGACggCCUGUa -3'
miRNA:   3'- -CGAGAAG-------UGG-GUU-------UUCCUGuaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 6635 0.67 0.995921
Target:  5'- aGCUCaUCugCCuauugccgcccccuGAcuGGGGCuUCCUGCu -3'
miRNA:   3'- -CGAGaAGugGGu-------------UU--UCCUGuAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 46487 0.67 0.994907
Target:  5'- aGCUCggCGCCCuccgcGGGGCGcagCCcgGCg -3'
miRNA:   3'- -CGAGaaGUGGGuuu--UCCUGUa--GGa-CG- -5'
23578 3' -49.1 NC_005261.1 + 114167 1.16 0.004161
Target:  5'- aGCUCUUCACCCAAAAGGACAUCCUGCa -3'
miRNA:   3'- -CGAGAAGUGGGUUUUCCUGUAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 95263 0.66 0.997793
Target:  5'- aGUcCUUCcCCCuGGAGuACAUCUUGCg -3'
miRNA:   3'- -CGaGAAGuGGGuUUUCcUGUAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 75977 0.66 0.997793
Target:  5'- aGCUCUUCccgggcgcggccGCCCucgcgcuGGACGcCCUGg -3'
miRNA:   3'- -CGAGAAG------------UGGGuuuu---CCUGUaGGACg -5'
23578 3' -49.1 NC_005261.1 + 109717 0.66 0.997365
Target:  5'- aGCUCgaguuaCAUCCAGAucGGCAaccaCCUGCg -3'
miRNA:   3'- -CGAGaa----GUGGGUUUucCUGUa---GGACG- -5'
23578 3' -49.1 NC_005261.1 + 66923 0.66 0.997365
Target:  5'- ------uGCCCAGGAGGGCGUCgaagGCg -3'
miRNA:   3'- cgagaagUGGGUUUUCCUGUAGga--CG- -5'
23578 3' -49.1 NC_005261.1 + 103459 0.66 0.99687
Target:  5'- gGCcgCcgCGCCCGucgccAGGGCGUCCaGCu -3'
miRNA:   3'- -CGa-GaaGUGGGUuu---UCCUGUAGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 14125 0.67 0.996051
Target:  5'- gGCUCgggcggugggcagUCGCUCGcGAGGACGcUCCaGCc -3'
miRNA:   3'- -CGAGa------------AGUGGGUuUUCCUGU-AGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 68371 0.66 0.99687
Target:  5'- cGCUCggcgUCGCCUc--GGGGC-UCgUGCu -3'
miRNA:   3'- -CGAGa---AGUGGGuuuUCCUGuAGgACG- -5'
23578 3' -49.1 NC_005261.1 + 75682 0.66 0.99687
Target:  5'- cCUCUUC-CUCGccGAGGACcagagCCUGCu -3'
miRNA:   3'- cGAGAAGuGGGUu-UUCCUGua---GGACG- -5'
23578 3' -49.1 NC_005261.1 + 31236 0.66 0.998161
Target:  5'- cGCUCUUC-CCCGAGcccuGGCGcCCgGCg -3'
miRNA:   3'- -CGAGAAGuGGGUUUuc--CUGUaGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 72024 0.66 0.99687
Target:  5'- gGCgacgCUgcgCGCCCcc-GGGAaguaccaGUCCUGCa -3'
miRNA:   3'- -CGa---GAa--GUGGGuuuUCCUg------UAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 112551 0.66 0.99802
Target:  5'- uGCUCUucgaccgcuaccUCGCCUAccucgagggcugcGAGGGCGUCgUGUg -3'
miRNA:   3'- -CGAGA------------AGUGGGUu------------UUCCUGUAGgACG- -5'
23578 3' -49.1 NC_005261.1 + 100584 0.66 0.99687
Target:  5'- cCUCgUCGCCCAGGAGcGCcgCCacGCg -3'
miRNA:   3'- cGAGaAGUGGGUUUUCcUGuaGGa-CG- -5'
23578 3' -49.1 NC_005261.1 + 37553 0.67 0.996301
Target:  5'- cGCUCccgccgcCGCCaccGGGGuGCGUCCUGCc -3'
miRNA:   3'- -CGAGaa-----GUGGguuUUCC-UGUAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 31599 0.67 0.99565
Target:  5'- cGCUCggCGCgC---AGGGCGUgCUGCu -3'
miRNA:   3'- -CGAGaaGUGgGuuuUCCUGUAgGACG- -5'
23578 3' -49.1 NC_005261.1 + 10537 0.66 0.997793
Target:  5'- cGCUCgcugUCGCCCcc--GGcGCG-CCUGCc -3'
miRNA:   3'- -CGAGa---AGUGGGuuuuCC-UGUaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 120611 0.66 0.997365
Target:  5'- cCUCggCGCCgu--GGGGC-UCCUGCu -3'
miRNA:   3'- cGAGaaGUGGguuuUCCUGuAGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.