miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 3' -56.1 NC_005261.1 + 14509 0.66 0.891131
Target:  5'- gCGGACCGCgacgacGCUGcuGAuGGCCGAGUa- -3'
miRNA:   3'- -GCUUGGCGac----CGAC--CU-CUGGCUCAag -5'
23579 3' -56.1 NC_005261.1 + 32273 0.66 0.891131
Target:  5'- cCGAggcgccGCCGCUGGUgcUGGAGGCgGGc--- -3'
miRNA:   3'- -GCU------UGGCGACCG--ACCUCUGgCUcaag -5'
23579 3' -56.1 NC_005261.1 + 111077 0.66 0.891131
Target:  5'- aGGAUCGagggcCUGGUgugGGGGGCCGGGg-- -3'
miRNA:   3'- gCUUGGC-----GACCGa--CCUCUGGCUCaag -5'
23579 3' -56.1 NC_005261.1 + 136790 0.66 0.891131
Target:  5'- cCGAggcgccGCCGCUGGUgcUGGAGGCgGGc--- -3'
miRNA:   3'- -GCU------UGGCGACCG--ACCUCUGgCUcaag -5'
23579 3' -56.1 NC_005261.1 + 67542 0.66 0.891131
Target:  5'- gCGGGCCGCgcuggacgccUGGCUGGAgGugCGGc--- -3'
miRNA:   3'- -GCUUGGCG----------ACCGACCU-CugGCUcaag -5'
23579 3' -56.1 NC_005261.1 + 25602 0.66 0.891131
Target:  5'- cCGGGCCGUgcagccGGCUGaGGugCGAGgcgcggUCg -3'
miRNA:   3'- -GCUUGGCGa-----CCGACcUCugGCUCa-----AG- -5'
23579 3' -56.1 NC_005261.1 + 54644 0.66 0.889096
Target:  5'- gCGAcgcGCUGCUGGCggccgcgGGcGccgcgggcacgcccGCCGAGUUCu -3'
miRNA:   3'- -GCU---UGGCGACCGa------CCuC--------------UGGCUCAAG- -5'
23579 3' -56.1 NC_005261.1 + 98065 0.66 0.889096
Target:  5'- gGGACCGCgGGCggcggguguguccuUGGAGAauCUGGGggCg -3'
miRNA:   3'- gCUUGGCGaCCG--------------ACCUCU--GGCUCaaG- -5'
23579 3' -56.1 NC_005261.1 + 119758 0.66 0.884266
Target:  5'- uGAACCGCUGGCau---ACCGccAGUUCu -3'
miRNA:   3'- gCUUGGCGACCGaccucUGGC--UCAAG- -5'
23579 3' -56.1 NC_005261.1 + 95572 0.66 0.880039
Target:  5'- cCGGccGCCGCuUGGCUGGuuccgcgcggccgcgGcGGCCGAGUc- -3'
miRNA:   3'- -GCU--UGGCG-ACCGACC---------------U-CUGGCUCAag -5'
23579 3' -56.1 NC_005261.1 + 34684 0.66 0.877176
Target:  5'- gGGGCCcCUgGGCccGGGGGCCGAGg-- -3'
miRNA:   3'- gCUUGGcGA-CCGa-CCUCUGGCUCaag -5'
23579 3' -56.1 NC_005261.1 + 96826 0.66 0.877176
Target:  5'- aGAGCUGUcGGCggugucGAGGCCGGGgUCg -3'
miRNA:   3'- gCUUGGCGaCCGac----CUCUGGCUCaAG- -5'
23579 3' -56.1 NC_005261.1 + 128634 0.66 0.869864
Target:  5'- cCGGGCCcgagGCggGGgUGGGGGCUGGGUg- -3'
miRNA:   3'- -GCUUGG----CGa-CCgACCUCUGGCUCAag -5'
23579 3' -56.1 NC_005261.1 + 72244 0.66 0.869864
Target:  5'- gCGGACCuGgUGGCcguUGGGGACCGgcuAGUg- -3'
miRNA:   3'- -GCUUGG-CgACCG---ACCUCUGGC---UCAag -5'
23579 3' -56.1 NC_005261.1 + 18699 0.66 0.869864
Target:  5'- gGGGCCuuGCUcGGCcgcGGGGACCGGGg-- -3'
miRNA:   3'- gCUUGG--CGA-CCGa--CCUCUGGCUCaag -5'
23579 3' -56.1 NC_005261.1 + 78557 0.66 0.869864
Target:  5'- gCGAuCCGCUcGCgcgccgGGAccGCCGAGUUCg -3'
miRNA:   3'- -GCUuGGCGAcCGa-----CCUc-UGGCUCAAG- -5'
23579 3' -56.1 NC_005261.1 + 24116 0.66 0.869864
Target:  5'- cCGGGCCcgagGCggGGgUGGGGGCUGGGUg- -3'
miRNA:   3'- -GCUUGG----CGa-CCgACCUCUGGCUCAag -5'
23579 3' -56.1 NC_005261.1 + 32986 0.67 0.862337
Target:  5'- gGGACCGCgGaGgaGGGGGCCGAc--- -3'
miRNA:   3'- gCUUGGCGaC-CgaCCUCUGGCUcaag -5'
23579 3' -56.1 NC_005261.1 + 22148 0.67 0.862337
Target:  5'- gCGGACCGC-GGCauccacGGGGACCGGc--- -3'
miRNA:   3'- -GCUUGGCGaCCGa-----CCUCUGGCUcaag -5'
23579 3' -56.1 NC_005261.1 + 137504 0.67 0.862337
Target:  5'- gGGACCGCgGaGgaGGGGGCCGAc--- -3'
miRNA:   3'- gCUUGGCGaC-CgaCCUCUGGCUcaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.