miRNA display CGI


Results 1 - 20 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 138193 0.69 0.285244
Target:  5'- aGGGCgcgGGCGGGCGgggggcagggcggaCGGCGGCUCggccgccgCGCGg -3'
miRNA:   3'- -UCCG---UCGCCCGC--------------GCCGCUGGGa-------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 138132 0.72 0.180938
Target:  5'- cGGGCGGCGGGgcccgGgGGCGcGCCC-CGCAc -3'
miRNA:   3'- -UCCGUCGCCCg----CgCCGC-UGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 138059 0.67 0.36402
Target:  5'- cGGCGGCGgcGGCgGCGGCGGCagcgguccugguCC-CGCGa -3'
miRNA:   3'- uCCGUCGC--CCG-CGCCGCUG------------GGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 138001 0.78 0.063712
Target:  5'- cGGCGGCGGcUGCGGCGGCCCgcagcccggCGCGg -3'
miRNA:   3'- uCCGUCGCCcGCGCCGCUGGGa--------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 137965 0.66 0.411569
Target:  5'- nGGCGGCGGcUGCGGCGGCggcUGCGg -3'
miRNA:   3'- uCCGUCGCCcGCGCCGCUGggaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 137941 0.67 0.387314
Target:  5'- cGGCGGCGGcUGCGGCGGCggcUGCGg -3'
miRNA:   3'- uCCGUCGCCcGCGCCGCUGggaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 137699 0.67 0.371676
Target:  5'- cGuGCAGCGGGCccCGcGCGACCC-CGgGg -3'
miRNA:   3'- uC-CGUCGCCCGc-GC-CGCUGGGaGCgU- -5'
23580 3' -65.7 NC_005261.1 + 136895 0.72 0.194307
Target:  5'- uGGUgcaGGCGcGGCGCGGCGGcguCCCggagCGCGu -3'
miRNA:   3'- uCCG---UCGC-CCGCGCCGCU---GGGa---GCGU- -5'
23580 3' -65.7 NC_005261.1 + 136571 0.69 0.286514
Target:  5'- aAGGCgcgGGUGGGCG-GGCGcagagacGCCCggCGCAg -3'
miRNA:   3'- -UCCG---UCGCCCGCgCCGC-------UGGGa-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 136376 0.67 0.379441
Target:  5'- cGGCGcgucuuCGGGCcCGGCG-CCUUCGCGc -3'
miRNA:   3'- uCCGUc-----GCCCGcGCCGCuGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 136197 0.68 0.341712
Target:  5'- uGGCcGCGGcGCgGCGGCGGCUgaUCGUg -3'
miRNA:   3'- uCCGuCGCC-CG-CGCCGCUGGg-AGCGu -5'
23580 3' -65.7 NC_005261.1 + 135986 0.76 0.100232
Target:  5'- cGGCGGCcugaguggccgccGGuGCGCGGCgGGCUCUCGCAc -3'
miRNA:   3'- uCCGUCG-------------CC-CGCGCCG-CUGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 135654 0.82 0.035227
Target:  5'- -uGC-GCGGGCGCgGGCGGCCCUCGCu -3'
miRNA:   3'- ucCGuCGCCCGCG-CCGCUGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 135466 0.66 0.427409
Target:  5'- cGGgGGCGGGCcucgaggcccgccGCGaCGGCCCgccgcggCGCAa -3'
miRNA:   3'- uCCgUCGCCCG-------------CGCcGCUGGGa------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 135449 0.74 0.125682
Target:  5'- cAGGCGgcGCGGGCGCuGCGGgaCCUCGUAc -3'
miRNA:   3'- -UCCGU--CGCCCGCGcCGCUg-GGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 135099 0.76 0.090883
Target:  5'- cGGCGGCGGaGCGCgaGGCgGACCC-CGCGu -3'
miRNA:   3'- uCCGUCGCC-CGCG--CCG-CUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 135035 0.66 0.409102
Target:  5'- cGGCGGCGaGGCcgacgccugcggcgGCaGCGGCCCgcCGCu -3'
miRNA:   3'- uCCGUCGC-CCG--------------CGcCGCUGGGa-GCGu -5'
23580 3' -65.7 NC_005261.1 + 134990 0.7 0.245239
Target:  5'- gGGGCcgccggGGCGccccuGGCGCGGCGGgCC-CGCAc -3'
miRNA:   3'- -UCCG------UCGC-----CCGCGCCGCUgGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 134839 0.66 0.454009
Target:  5'- cGGCGGaagugccGGCGCGGCuggcGGCCgcgCUCGCGg -3'
miRNA:   3'- uCCGUCgc-----CCGCGCCG----CUGG---GAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 134764 0.78 0.070555
Target:  5'- uGGCGcgguacucgacGCGcGGCGCGGCGGCCCgCGCGc -3'
miRNA:   3'- uCCGU-----------CGC-CCGCGCCGCUGGGaGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.