Results 41 - 60 of 733 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23580 | 3' | -65.7 | NC_005261.1 | + | 6438 | 0.8 | 0.053251 |
Target: 5'- aGGcGCGGCGGGCGCGGCGucgggGCCCagcggCGCGc -3' miRNA: 3'- -UC-CGUCGCCCGCGCCGC-----UGGGa----GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 125181 | 0.8 | 0.045628 |
Target: 5'- cGGCAG-GGGCGCGcGCGGCCC-CGCGc -3' miRNA: 3'- uCCGUCgCCCGCGC-CGCUGGGaGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 38370 | 0.81 | 0.042227 |
Target: 5'- cGGCGGCGGcGCGCGGCGGCCggUGCc -3' miRNA: 3'- uCCGUCGCC-CGCGCCGCUGGgaGCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 108965 | 0.81 | 0.042227 |
Target: 5'- -aGCAGCGGGCccuccagcgGCGGCGGCCCgUCGCGc -3' miRNA: 3'- ucCGUCGCCCG---------CGCCGCUGGG-AGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 21587 | 0.83 | 0.031752 |
Target: 5'- cGGCGGCGGGCGC-GCGGgCCUCGCc -3' miRNA: 3'- uCCGUCGCCCGCGcCGCUgGGAGCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 8103 | 0.78 | 0.06878 |
Target: 5'- cGGCGGaCGGcGCGCGGCGGCUCgccaaggCGCAg -3' miRNA: 3'- uCCGUC-GCC-CGCGCCGCUGGGa------GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 134764 | 0.78 | 0.070555 |
Target: 5'- uGGCGcgguacucgacGCGcGGCGCGGCGGCCCgCGCGc -3' miRNA: 3'- uCCGU-----------CGC-CCGCGCCGCUGGGaGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 35995 | 0.76 | 0.093198 |
Target: 5'- -cGCAGCGGGCGaCGGCGGCCaucgaggccgugCUUGCGu -3' miRNA: 3'- ucCGUCGCCCGC-GCCGCUGG------------GAGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 127261 | 0.76 | 0.090883 |
Target: 5'- cGGGC-GCgGGGCgGCGGCGGCCCaCGCGu -3' miRNA: 3'- -UCCGuCG-CCCG-CGCCGCUGGGaGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 108068 | 0.76 | 0.090883 |
Target: 5'- cAGcGCGGCGGGCGCGGCG-CCgCUaaggCGCGc -3' miRNA: 3'- -UC-CGUCGCCCGCGCCGCuGG-GA----GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 78860 | 0.76 | 0.090883 |
Target: 5'- uGGC-GCGGGCGCuGGCGggcgacACCCUCGUg -3' miRNA: 3'- uCCGuCGCCCGCG-CCGC------UGGGAGCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 69699 | 0.76 | 0.090883 |
Target: 5'- gGGGCGcGCGGGCGcCGGCGGCgCCg-GCAg -3' miRNA: 3'- -UCCGU-CGCCCGC-GCCGCUG-GGagCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 46748 | 0.77 | 0.088623 |
Target: 5'- cGGGCGGCGGcCGCGGCGGCgCCgcugggaggCGCGg -3' miRNA: 3'- -UCCGUCGCCcGCGCCGCUG-GGa--------GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 34425 | 0.77 | 0.088623 |
Target: 5'- uGGCGGCGGGCGCaacGGCGcacaccgaagacGgCCUCGCGg -3' miRNA: 3'- uCCGUCGCCCGCG---CCGC------------UgGGAGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 107356 | 0.77 | 0.080105 |
Target: 5'- cGGGCGGCaGGGC-CGGCGGCCCccUCGUc -3' miRNA: 3'- -UCCGUCG-CCCGcGCCGCUGGG--AGCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 34776 | 0.77 | 0.078101 |
Target: 5'- uGGCGaCGGGCGCGGCGGCCgacCGCGa -3' miRNA: 3'- uCCGUcGCCCGCGCCGCUGGga-GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 26600 | 0.78 | 0.074236 |
Target: 5'- cGGCGGCGGGCgGCGGCGGCacggCGCc -3' miRNA: 3'- uCCGUCGCCCG-CGCCGCUGgga-GCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 11708 | 0.78 | 0.074236 |
Target: 5'- aGGcGCGGCGGGCGCgGGCG-CCCagGCAg -3' miRNA: 3'- -UC-CGUCGCCCGCG-CCGCuGGGagCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 42497 | 0.78 | 0.072373 |
Target: 5'- cGGCGGCGGcgccgcugaGCGCGGCgGGCCCgagCGCGa -3' miRNA: 3'- uCCGUCGCC---------CGCGCCG-CUGGGa--GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 88175 | 0.78 | 0.072373 |
Target: 5'- cGGCAGCGGGCuucucgcgGCGGCGcugcACCgUCGCGc -3' miRNA: 3'- uCCGUCGCCCG--------CGCCGC----UGGgAGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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