miRNA display CGI

Results 1 - 20 of 733 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23580	3'	-65.7	NC_005261.1	+	39447	0.66	0.46278
	Target:  5'- aGGGCcccgagccuccGCGcGGCGCGGCGccccaacggGCCCgcCGCGg -3' miRNA:   3'- -UCCGu----------CGC-CCGCGCCGC---------UGGGa-GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	22988	0.66	0.454009
	Target:  5'- gAGGCGGCggaggaagagGGGgGCccggaGGCGGCCCgcgaaCGCc -3' miRNA:   3'- -UCCGUCG----------CCCgCG-----CCGCUGGGa----GCGu -5'
23580	3'	-65.7	NC_005261.1	+	35461	0.66	0.454009
	Target:  5'- uAGGC-GCGGcGCGCGcGCGucccgggguCCCUgcCGCGg -3' miRNA:   3'- -UCCGuCGCC-CGCGC-CGCu--------GGGA--GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	113920	1.07	0.000472
	Target:  5'- gAGGCAGCGGGCGCGGCGACCCUCGCAc -3' miRNA:   3'- -UCCGUCGCCCGCGCCGCUGGGAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	17129	0.66	0.46278
	Target:  5'- cGGCGGCGGGUacGcCGGCGGgUCgaCGUAg -3' miRNA:   3'- uCCGUCGCCCG--C-GCCGCUgGGa-GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	1592	0.66	0.46278
	Target:  5'- cGGuUGGC-GGCGCGGUGGCuggccgCCUCGCc -3' miRNA:   3'- uCC-GUCGcCCGCGCCGCUG------GGAGCGu -5'
23580	3'	-65.7	NC_005261.1	+	18668	0.66	0.461899
	Target:  5'- cGGGCcccAGCGGGCGaaGgGGCCCcaggcugUUGCGg -3' miRNA:   3'- -UCCG---UCGCCCGCgcCgCUGGG-------AGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	133388	0.66	0.460139
	Target:  5'- cGGCccaCGGGCGC-GCGGCCCaaaacaaggcccgcUCGCu -3' miRNA:   3'- uCCGuc-GCCCGCGcCGCUGGG--------------AGCGu -5'
23580	3'	-65.7	NC_005261.1	+	98003	0.66	0.454009
	Target:  5'- gAGGCGGCggGGGCGCuGGCGGCgaggCUggagacgcCGCGg -3' miRNA:   3'- -UCCGUCG--CCCGCG-CCGCUGg---GA--------GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	28580	0.66	0.454009
	Target:  5'- gAGGCGcGCGaGCGcCGGCGGgCCgccCGCGc -3' miRNA:   3'- -UCCGU-CGCcCGC-GCCGCUgGGa--GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	30322	0.66	0.454009
	Target:  5'- cGGCGGaagugccGGCGCGGCuggcGGCCgcgCUCGCGg -3' miRNA:   3'- uCCGUCgc-----CCGCGCCG----CUGG---GAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	131929	0.66	0.454009
	Target:  5'- uGGCGcgcGCGGGacCGCGGUG-CCCgCGCc -3' miRNA:   3'- uCCGU---CGCCC--GCGCCGCuGGGaGCGu -5'
23580	3'	-65.7	NC_005261.1	+	119304	0.66	0.46278
	Target:  5'- -aGCGGaGGGCGaGGCcucGCCCUCGCc -3' miRNA:   3'- ucCGUCgCCCGCgCCGc--UGGGAGCGu -5'
23580	3'	-65.7	NC_005261.1	+	105907	0.66	0.454009
	Target:  5'- cGGGC-GCGGGCcgcucGCGcGCGcccacgccgcGCCCUcCGCGa -3' miRNA:   3'- -UCCGuCGCCCG-----CGC-CGC----------UGGGA-GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	77084	0.66	0.46278
	Target:  5'- gAGGC-GCuGGCGCGGaCGcuGCUCUCGaCGg -3' miRNA:   3'- -UCCGuCGcCCGCGCC-GC--UGGGAGC-GU- -5'
23580	3'	-65.7	NC_005261.1	+	34484	0.66	0.460139
	Target:  5'- -uGCGGCGGGUGCuggagugggucgagGGCGcucuggugggcACCUUCGCc -3' miRNA:   3'- ucCGUCGCCCGCG--------------CCGC-----------UGGGAGCGu -5'
23580	3'	-65.7	NC_005261.1	+	59582	0.66	0.454009
	Target:  5'- -cGCAGCGGGUGCcGCGccgccaccACCUcCGCGg -3' miRNA:   3'- ucCGUCGCCCGCGcCGC--------UGGGaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	17472	0.66	0.454009
	Target:  5'- cGGGCAgacGCGGGCGCGcCGGggggUCCUagaCGCGg -3' miRNA:   3'- -UCCGU---CGCCCGCGCcGCU----GGGA---GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	69531	0.66	0.46278
	Target:  5'- uGGC-GCGGGCGCuGGCG-CgCgCGCu -3' miRNA:   3'- uCCGuCGCCCGCG-CCGCuGgGaGCGu -5'
23580	3'	-65.7	NC_005261.1	+	53223	0.66	0.461899
	Target:  5'- cGGUcugGGUGGGaUGCGGCGccagcucGCCCcgCGCGu -3' miRNA:   3'- uCCG---UCGCCC-GCGCCGC-------UGGGa-GCGU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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