Results 41 - 60 of 733 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23580 | 3' | -65.7 | NC_005261.1 | + | 3372 | 0.66 | 0.436743 |
Target: 5'- aGGGCcGCGaGCGCGGCcGCCagcCGCGc -3' miRNA: 3'- -UCCGuCGCcCGCGCCGcUGGga-GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 22988 | 0.66 | 0.454009 |
Target: 5'- gAGGCGGCggaggaagagGGGgGCccggaGGCGGCCCgcgaaCGCc -3' miRNA: 3'- -UCCGUCG----------CCCgCG-----CCGCUGGGa----GCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 77084 | 0.66 | 0.46278 |
Target: 5'- gAGGC-GCuGGCGCGGaCGcuGCUCUCGaCGg -3' miRNA: 3'- -UCCGuCGcCCGCGCC-GC--UGGGAGC-GU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 90387 | 0.66 | 0.436743 |
Target: 5'- gAGGCcccgccGGCGGG-GCuGGCG-CCCggCGCGg -3' miRNA: 3'- -UCCG------UCGCCCgCG-CCGCuGGGa-GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 119304 | 0.66 | 0.46278 |
Target: 5'- -aGCGGaGGGCGaGGCcucGCCCUCGCc -3' miRNA: 3'- ucCGUCgCCCGCgCCGc--UGGGAGCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 20187 | 0.66 | 0.411569 |
Target: 5'- aAGGCAGCaGGCGaaGCGgggccgccaaagGCCC-CGCGc -3' miRNA: 3'- -UCCGUCGcCCGCgcCGC------------UGGGaGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 17129 | 0.66 | 0.46278 |
Target: 5'- cGGCGGCGGGUacGcCGGCGGgUCgaCGUAg -3' miRNA: 3'- uCCGUCGCCCG--C-GCCGCUgGGa-GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 28124 | 0.66 | 0.419861 |
Target: 5'- gGGGCcucgaGGCGGGCGCccucGGCGcCCCcaucucCGCc -3' miRNA: 3'- -UCCG-----UCGCCCGCG----CCGCuGGGa-----GCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 36547 | 0.66 | 0.419861 |
Target: 5'- aAGGCA--GGGCGgGGCGAgCCUaGCc -3' miRNA: 3'- -UCCGUcgCCCGCgCCGCUgGGAgCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 15779 | 0.66 | 0.428253 |
Target: 5'- aAGGCcgcuGGCGGGCGCcgcccgcGCGGCCagCGCc -3' miRNA: 3'- -UCCG----UCGCCCGCGc------CGCUGGgaGCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 77672 | 0.66 | 0.428253 |
Target: 5'- cAGGC-GCaGGGCGCGGaCGGgCCggGCu -3' miRNA: 3'- -UCCGuCG-CCCGCGCC-GCUgGGagCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 19760 | 0.66 | 0.428253 |
Target: 5'- -cGC-GCGGGCGCGG-GcCCCgUCGCc -3' miRNA: 3'- ucCGuCGCCCGCGCCgCuGGG-AGCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 5123 | 0.66 | 0.436743 |
Target: 5'- cGGC-GCGGGCGgccCGcCGGCgCUCGCGc -3' miRNA: 3'- uCCGuCGCCCGC---GCcGCUGgGAGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 14947 | 0.66 | 0.44533 |
Target: 5'- uGGCgcuggaagcgAGCGGGCGUgccuggGGCGACUg-CGCGg -3' miRNA: 3'- uCCG----------UCGCCCGCG------CCGCUGGgaGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 54373 | 0.66 | 0.44533 |
Target: 5'- cGGGCAGCGGcuCGgGGCG-CCCgCGa- -3' miRNA: 3'- -UCCGUCGCCc-GCgCCGCuGGGaGCgu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 70669 | 0.66 | 0.44879 |
Target: 5'- cGGCcGCGGGCcgcaccuccagccagGCGuccagcGCGGCCCgCGCGg -3' miRNA: 3'- uCCGuCGCCCG---------------CGC------CGCUGGGaGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 35461 | 0.66 | 0.454009 |
Target: 5'- uAGGC-GCGGcGCGCGcGCGucccgggguCCCUgcCGCGg -3' miRNA: 3'- -UCCGuCGCC-CGCGC-CGCu--------GGGA--GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 105907 | 0.66 | 0.454009 |
Target: 5'- cGGGC-GCGGGCcgcucGCGcGCGcccacgccgcGCCCUcCGCGa -3' miRNA: 3'- -UCCGuCGCCCG-----CGC-CGC----------UGGGA-GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 98003 | 0.66 | 0.454009 |
Target: 5'- gAGGCGGCggGGGCGCuGGCGGCgaggCUggagacgcCGCGg -3' miRNA: 3'- -UCCGUCG--CCCGCG-CCGCUGg---GA--------GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 18668 | 0.66 | 0.461899 |
Target: 5'- cGGGCcccAGCGGGCGaaGgGGCCCcaggcugUUGCGg -3' miRNA: 3'- -UCCG---UCGCCCGCgcCgCUGGG-------AGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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