miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 5' -56.4 NC_005261.1 + 82490 0.65 0.861355
Target:  5'- ---uCGAGGCCGuccggcagcacGCCCGcGACAUAg -3'
miRNA:   3'- aaauGCUCCGGCuca--------CGGGC-CUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 23481 0.66 0.856648
Target:  5'- --gGCGAGuGCgCGGGcccGCCUGGGCAg- -3'
miRNA:   3'- aaaUGCUC-CG-GCUCa--CGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 105758 0.66 0.856648
Target:  5'- --cGCGGGGaCCuGGGUGCUCaGGGCGc- -3'
miRNA:   3'- aaaUGCUCC-GG-CUCACGGG-CCUGUau -5'
23580 5' -56.4 NC_005261.1 + 90398 0.66 0.856648
Target:  5'- --gGCGGGGCUG-GcGCCCGGcGCGg- -3'
miRNA:   3'- aaaUGCUCCGGCuCaCGGGCC-UGUau -5'
23580 5' -56.4 NC_005261.1 + 127998 0.66 0.856648
Target:  5'- --gGCGAGuGCgCGGGcccGCCUGGGCAg- -3'
miRNA:   3'- aaaUGCUC-CG-GCUCa--CGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 47244 0.66 0.856648
Target:  5'- --gACGAGGCCGAGguacuucuuCuuGGugAUGa -3'
miRNA:   3'- aaaUGCUCCGGCUCac-------GggCCugUAU- -5'
23580 5' -56.4 NC_005261.1 + 135000 0.66 0.848634
Target:  5'- --gAgGAGGCCGGG-GCCuCGGAa--- -3'
miRNA:   3'- aaaUgCUCCGGCUCaCGG-GCCUguau -5'
23580 5' -56.4 NC_005261.1 + 94822 0.66 0.848634
Target:  5'- --gGCgGAGGCCGcccccGGcGCCUGGACGg- -3'
miRNA:   3'- aaaUG-CUCCGGC-----UCaCGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 59076 0.66 0.848634
Target:  5'- --cACGGGGCUGcuGGUGCucgCCGGGCu-- -3'
miRNA:   3'- aaaUGCUCCGGC--UCACG---GGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 35305 0.66 0.848634
Target:  5'- --aGCGccGGGCCGGGcUGCUCGGGgAg- -3'
miRNA:   3'- aaaUGC--UCCGGCUC-ACGGGCCUgUau -5'
23580 5' -56.4 NC_005261.1 + 30483 0.66 0.848634
Target:  5'- --gAgGAGGCCGGG-GCCuCGGAa--- -3'
miRNA:   3'- aaaUgCUCCGGCUCaCGG-GCCUguau -5'
23580 5' -56.4 NC_005261.1 + 98116 0.66 0.840415
Target:  5'- --gGCGAGGCUGGGgacGCCgCGG-CAc- -3'
miRNA:   3'- aaaUGCUCCGGCUCa--CGG-GCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 129699 0.66 0.840415
Target:  5'- ---cCGGGGCCGGG-GCCgGaGGCAg- -3'
miRNA:   3'- aaauGCUCCGGCUCaCGGgC-CUGUau -5'
23580 5' -56.4 NC_005261.1 + 29299 0.66 0.840415
Target:  5'- --gGCGAGGCCug--GCCCGG-CAg- -3'
miRNA:   3'- aaaUGCUCCGGcucaCGGGCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 15967 0.66 0.840415
Target:  5'- --gGCG-GGCgGGGgaggGCCCGGGCc-- -3'
miRNA:   3'- aaaUGCuCCGgCUCa---CGGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 113910 0.66 0.840415
Target:  5'- --cGCGAuGGCCGAG-GCagCGGGCGc- -3'
miRNA:   3'- aaaUGCU-CCGGCUCaCGg-GCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 11698 0.66 0.840415
Target:  5'- --cGCGuGGCCGAGgcgcggcggGCgCGGGCGc- -3'
miRNA:   3'- aaaUGCuCCGGCUCa--------CGgGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 133816 0.66 0.840415
Target:  5'- --gGCGAGGCCug--GCCCGG-CAg- -3'
miRNA:   3'- aaaUGCUCCGGcucaCGGGCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 54089 0.66 0.840415
Target:  5'- --gGCGuGGCCGAG-GCCCGccaGCGa- -3'
miRNA:   3'- aaaUGCuCCGGCUCaCGGGCc--UGUau -5'
23580 5' -56.4 NC_005261.1 + 107495 0.66 0.840415
Target:  5'- --gGCuGAGGCUGGG-GCUCGGGCc-- -3'
miRNA:   3'- aaaUG-CUCCGGCUCaCGGGCCUGuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.