miRNA display CGI


Results 1 - 20 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 5' -56.4 NC_005261.1 + 136073 0.68 0.718765
Target:  5'- --cACGccuGGGCCGGGUccuggacgggcGCgCCGGACGUGa -3'
miRNA:   3'- aaaUGC---UCCGGCUCA-----------CG-GGCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 135039 0.68 0.748774
Target:  5'- --gGCGAGGCCGAc-GCCUGcGGCGg- -3'
miRNA:   3'- aaaUGCUCCGGCUcaCGGGC-CUGUau -5'
23580 5' -56.4 NC_005261.1 + 135000 0.66 0.848634
Target:  5'- --gAgGAGGCCGGG-GCCuCGGAa--- -3'
miRNA:   3'- aaaUgCUCCGGCUCaCGG-GCCUguau -5'
23580 5' -56.4 NC_005261.1 + 133816 0.66 0.840415
Target:  5'- --gGCGAGGCCug--GCCCGG-CAg- -3'
miRNA:   3'- aaaUGCUCCGGcucaCGGGCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 131771 0.68 0.748774
Target:  5'- ---gUGGGGCgGGGUGUgCGGGCAg- -3'
miRNA:   3'- aaauGCUCCGgCUCACGgGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 129699 0.66 0.840415
Target:  5'- ---cCGGGGCCGGG-GCCgGaGGCAg- -3'
miRNA:   3'- aaauGCUCCGGCUCaCGGgC-CUGUau -5'
23580 5' -56.4 NC_005261.1 + 128882 0.67 0.796524
Target:  5'- --gACGAGGCgGGG-GCCgGGugGg- -3'
miRNA:   3'- aaaUGCUCCGgCUCaCGGgCCugUau -5'
23580 5' -56.4 NC_005261.1 + 127998 0.66 0.856648
Target:  5'- --gGCGAGuGCgCGGGcccGCCUGGGCAg- -3'
miRNA:   3'- aaaUGCUC-CG-GCUCa--CGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 127485 0.68 0.728859
Target:  5'- --gACGAGGCCGAGga-CCGGGa--- -3'
miRNA:   3'- aaaUGCUCCGGCUCacgGGCCUguau -5'
23580 5' -56.4 NC_005261.1 + 125719 0.66 0.823394
Target:  5'- --cGCGGGGCCccgcgcGGUcGCCCGGgggGCAUGg -3'
miRNA:   3'- aaaUGCUCCGGc-----UCA-CGGGCC---UGUAU- -5'
23580 5' -56.4 NC_005261.1 + 124455 0.76 0.312025
Target:  5'- ---cCGGGGCCGGGUGCCCucagGGGCGc- -3'
miRNA:   3'- aaauGCUCCGGCUCACGGG----CCUGUau -5'
23580 5' -56.4 NC_005261.1 + 123157 0.69 0.698357
Target:  5'- -aUACGAGGgCGGGgcgggcGCgCGGGCGUGg -3'
miRNA:   3'- aaAUGCUCCgGCUCa-----CGgGCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 121186 0.75 0.366359
Target:  5'- --cACGGGGCCGGGgccggGCCCGGGg--- -3'
miRNA:   3'- aaaUGCUCCGGCUCa----CGGGCCUguau -5'
23580 5' -56.4 NC_005261.1 + 120867 0.77 0.270501
Target:  5'- aUUGCGAgagucggaccugGGCgGGGUGCCCGGGCGg- -3'
miRNA:   3'- aAAUGCU------------CCGgCUCACGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 116637 0.66 0.831999
Target:  5'- --gACGAGGgCGAG-GCCCGcGCGc- -3'
miRNA:   3'- aaaUGCUCCgGCUCaCGGGCcUGUau -5'
23580 5' -56.4 NC_005261.1 + 113962 1.04 0.003855
Target:  5'- uUUUACGAGGCCGAGUGCCCGGACAUAg -3'
miRNA:   3'- -AAAUGCUCCGGCUCACGGGCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 113910 0.66 0.840415
Target:  5'- --cGCGAuGGCCGAG-GCagCGGGCGc- -3'
miRNA:   3'- aaaUGCU-CCGGCUCaCGg-GCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 109255 0.7 0.625591
Target:  5'- -gUGCGGGGCCacgaaguccagcGAGcugaGCCCGGACGc- -3'
miRNA:   3'- aaAUGCUCCGG------------CUCa---CGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 107495 0.66 0.840415
Target:  5'- --gGCuGAGGCUGGG-GCUCGGGCc-- -3'
miRNA:   3'- aaaUG-CUCCGGCUCaCGGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 107462 0.67 0.768263
Target:  5'- ---cCGcGGCCGGGcuccgGCCCGGACu-- -3'
miRNA:   3'- aaauGCuCCGGCUCa----CGGGCCUGuau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.