miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 5' -56.4 NC_005261.1 + 23481 0.66 0.856648
Target:  5'- --gGCGAGuGCgCGGGcccGCCUGGGCAg- -3'
miRNA:   3'- aaaUGCUC-CG-GCUCa--CGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 607 0.67 0.777822
Target:  5'- --cGCgGAGGgCGAGUGCCC-GACGc- -3'
miRNA:   3'- aaaUG-CUCCgGCUCACGGGcCUGUau -5'
23580 5' -56.4 NC_005261.1 + 44964 0.68 0.758577
Target:  5'- -cUGCGGGacgcGCgCGAGgGCCCGGGCGg- -3'
miRNA:   3'- aaAUGCUC----CG-GCUCaCGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 113962 1.04 0.003855
Target:  5'- uUUUACGAGGCCGAGUGCCCGGACAUAg -3'
miRNA:   3'- -AAAUGCUCCGGCUCACGGGCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 30483 0.66 0.848634
Target:  5'- --gAgGAGGCCGGG-GCCuCGGAa--- -3'
miRNA:   3'- aaaUgCUCCGGCUCaCGG-GCCUguau -5'
23580 5' -56.4 NC_005261.1 + 129699 0.66 0.840415
Target:  5'- ---cCGGGGCCGGG-GCCgGaGGCAg- -3'
miRNA:   3'- aaauGCUCCGGCUCaCGGgC-CUGUau -5'
23580 5' -56.4 NC_005261.1 + 98116 0.66 0.840415
Target:  5'- --gGCGAGGCUGGGgacGCCgCGG-CAc- -3'
miRNA:   3'- aaaUGCUCCGGCUCa--CGG-GCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 29299 0.66 0.840415
Target:  5'- --gGCGAGGCCug--GCCCGG-CAg- -3'
miRNA:   3'- aaaUGCUCCGGcucaCGGGCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 19722 0.66 0.831999
Target:  5'- ---uCGAGGCCGAG-GCCCcGAUc-- -3'
miRNA:   3'- aaauGCUCCGGCUCaCGGGcCUGuau -5'
23580 5' -56.4 NC_005261.1 + 34321 0.67 0.785372
Target:  5'- --gGgGAGGCCGAGgggccccaagggGCCgGGGCGg- -3'
miRNA:   3'- aaaUgCUCCGGCUCa-----------CGGgCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 128882 0.67 0.796524
Target:  5'- --gACGAGGCgGGG-GCCgGGugGg- -3'
miRNA:   3'- aaaUGCUCCGgCUCaCGGgCCugUau -5'
23580 5' -56.4 NC_005261.1 + 39728 0.66 0.839582
Target:  5'- gUUugGGGGgCGGGUGCCCcagucgcGGAUc-- -3'
miRNA:   3'- aAAugCUCCgGCUCACGGG-------CCUGuau -5'
23580 5' -56.4 NC_005261.1 + 105758 0.66 0.856648
Target:  5'- --cGCGGGGaCCuGGGUGCUCaGGGCGc- -3'
miRNA:   3'- aaaUGCUCC-GG-CUCACGGG-CCUGUau -5'
23580 5' -56.4 NC_005261.1 + 63598 0.67 0.796524
Target:  5'- --cGCGGGGCCcuGUGgCCGGAUg-- -3'
miRNA:   3'- aaaUGCUCCGGcuCACgGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 90398 0.66 0.856648
Target:  5'- --gGCGGGGCUG-GcGCCCGGcGCGg- -3'
miRNA:   3'- aaaUGCUCCGGCuCaCGGGCC-UGUau -5'
23580 5' -56.4 NC_005261.1 + 15967 0.66 0.840415
Target:  5'- --gGCG-GGCgGGGgaggGCCCGGGCc-- -3'
miRNA:   3'- aaaUGCuCCGgCUCa---CGGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 44880 0.67 0.787246
Target:  5'- --cGCGAGcGCCGcGGggaugGCCgGGGCGUAc -3'
miRNA:   3'- aaaUGCUC-CGGC-UCa----CGGgCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 2945 0.67 0.768263
Target:  5'- ---cCGcGGCCGGGcuccgGCCCGGACu-- -3'
miRNA:   3'- aaauGCuCCGGCUCa----CGGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 35305 0.66 0.848634
Target:  5'- --aGCGccGGGCCGGGcUGCUCGGGgAg- -3'
miRNA:   3'- aaaUGC--UCCGGCUC-ACGGGCCUgUau -5'
23580 5' -56.4 NC_005261.1 + 113910 0.66 0.840415
Target:  5'- --cGCGAuGGCCGAG-GCagCGGGCGc- -3'
miRNA:   3'- aaaUGCU-CCGGCUCaCGg-GCCUGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.