Results 21 - 40 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 103772 | 0.7 | 0.646485 |
Target: 5'- -gUACGGGGCCcccggcccGUGCCCGGcGCGUu -3' miRNA: 3'- aaAUGCUCCGGcu------CACGGGCC-UGUAu -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 19359 | 0.69 | 0.677716 |
Target: 5'- --cGCGGuGGCCGAGgccaggGCCgCGGGCGc- -3' miRNA: 3'- aaaUGCU-CCGGCUCa-----CGG-GCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 95097 | 0.69 | 0.688061 |
Target: 5'- --gGCGAGGCCGA-UGCCgaGGGCu-- -3' miRNA: 3'- aaaUGCUCCGGCUcACGGg-CCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 34357 | 0.69 | 0.677716 |
Target: 5'- --gACGGGGCCGGGcGCCgCGcGGCGc- -3' miRNA: 3'- aaaUGCUCCGGCUCaCGG-GC-CUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 31275 | 0.69 | 0.656919 |
Target: 5'- ---cCGAGGCgGAGcgcGCCCGGGCcgAg -3' miRNA: 3'- aaauGCUCCGgCUCa--CGGGCCUGuaU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 123157 | 0.69 | 0.698357 |
Target: 5'- -aUACGAGGgCGGGgcgggcGCgCGGGCGUGg -3' miRNA: 3'- aaAUGCUCCgGCUCa-----CGgGCCUGUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 56842 | 0.69 | 0.667332 |
Target: 5'- --gGgGAGGCCGGGaGCCCGG-CGc- -3' miRNA: 3'- aaaUgCUCCGGCUCaCGGGCCuGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 31670 | 0.69 | 0.698357 |
Target: 5'- ---cCGGGGCCGGcgcgcgccgGCCCGGACGc- -3' miRNA: 3'- aaauGCUCCGGCUca-------CGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 90787 | 0.69 | 0.677716 |
Target: 5'- --aGCG-GGCCGGGcGCCuguCGGACGUGu -3' miRNA: 3'- aaaUGCuCCGGCUCaCGG---GCCUGUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 23232 | 0.69 | 0.698357 |
Target: 5'- --cGCGGGGCCGGG-GCCgCGG-CGg- -3' miRNA: 3'- aaaUGCUCCGGCUCaCGG-GCCuGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 30331 | 0.69 | 0.698357 |
Target: 5'- ---cCGAGGCCGcG-GCCgCGGACAa- -3' miRNA: 3'- aaauGCUCCGGCuCaCGG-GCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 48301 | 0.68 | 0.738865 |
Target: 5'- --aGCGAGGCCucGGGgggcgcgucggGCCCGGGCu-- -3' miRNA: 3'- aaaUGCUCCGG--CUCa----------CGGGCCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 27254 | 0.68 | 0.748774 |
Target: 5'- ---gUGGGGCgGGGUGUgCGGGCAg- -3' miRNA: 3'- aaauGCUCCGgCUCACGgGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 16956 | 0.68 | 0.757602 |
Target: 5'- --aGCGAGGCCGGGcgGCCgccccgucugcggCGGACc-- -3' miRNA: 3'- aaaUGCUCCGGCUCa-CGG-------------GCCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 131771 | 0.68 | 0.748774 |
Target: 5'- ---gUGGGGCgGGGUGUgCGGGCAg- -3' miRNA: 3'- aaauGCUCCGgCUCACGgGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 31556 | 0.68 | 0.718765 |
Target: 5'- --cACGccuGGGCCGGGUccuggacgggcGCgCCGGACGUGa -3' miRNA: 3'- aaaUGC---UCCGGCUCA-----------CG-GGCCUGUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 72051 | 0.68 | 0.748774 |
Target: 5'- ----gGAGGCgGAcGUGCCUGuGACGUAc -3' miRNA: 3'- aaaugCUCCGgCU-CACGGGC-CUGUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 15721 | 0.68 | 0.728859 |
Target: 5'- --gGCGAccccauGGuuGAGaGCCCGGACAc- -3' miRNA: 3'- aaaUGCU------CCggCUCaCGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 6023 | 0.68 | 0.728859 |
Target: 5'- --cGCGuGGCgCGGGcggGCCCGGACc-- -3' miRNA: 3'- aaaUGCuCCG-GCUCa--CGGGCCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 136073 | 0.68 | 0.718765 |
Target: 5'- --cACGccuGGGCCGGGUccuggacgggcGCgCCGGACGUGa -3' miRNA: 3'- aaaUGC---UCCGGCUCA-----------CG-GGCCUGUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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