miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 5' -56.4 NC_005261.1 + 113962 1.04 0.003855
Target:  5'- uUUUACGAGGCCGAGUGCCCGGACAUAg -3'
miRNA:   3'- -AAAUGCUCCGGCUCACGGGCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 53310 0.83 0.110156
Target:  5'- --cGCGAGGCCGAGgcccGCCCGGAgGUGu -3'
miRNA:   3'- aaaUGCUCCGGCUCa---CGGGCCUgUAU- -5'
23580 5' -56.4 NC_005261.1 + 15931 0.8 0.181441
Target:  5'- ---cCGGGGCCGGG-GCCCGGGCAg- -3'
miRNA:   3'- aaauGCUCCGGCUCaCGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 120867 0.77 0.270501
Target:  5'- aUUGCGAgagucggaccugGGCgGGGUGCCCGGGCGg- -3'
miRNA:   3'- aAAUGCU------------CCGgCUCACGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 97258 0.76 0.319398
Target:  5'- --cGCGGGGUCGGGUGgCgGGACGUAc -3'
miRNA:   3'- aaaUGCUCCGGCUCACgGgCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 124455 0.76 0.312025
Target:  5'- ---cCGGGGCCGGGUGCCCucagGGGCGc- -3'
miRNA:   3'- aaauGCUCCGGCUCACGGG----CCUGUau -5'
23580 5' -56.4 NC_005261.1 + 121186 0.75 0.366359
Target:  5'- --cACGGGGCCGGGgccggGCCCGGGg--- -3'
miRNA:   3'- aaaUGCUCCGGCUCa----CGGGCCUguau -5'
23580 5' -56.4 NC_005261.1 + 103679 0.75 0.342298
Target:  5'- --cGCGAGGCCGAGcGCCCGuuUAUAg -3'
miRNA:   3'- aaaUGCUCCGGCUCaCGGGCcuGUAU- -5'
23580 5' -56.4 NC_005261.1 + 102636 0.74 0.39156
Target:  5'- --gGCGGGGCCGGGcgcugggGUCCGGGCGa- -3'
miRNA:   3'- aaaUGCUCCGGCUCa------CGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 97318 0.74 0.408977
Target:  5'- --cGCGGGGCCGGG-GCCCgauaGGGCAa- -3'
miRNA:   3'- aaaUGCUCCGGCUCaCGGG----CCUGUau -5'
23580 5' -56.4 NC_005261.1 + 65805 0.73 0.454555
Target:  5'- --cGCG-GGUCgGGGUGCCCGGGCGg- -3'
miRNA:   3'- aaaUGCuCCGG-CUCACGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 60132 0.72 0.502745
Target:  5'- ---cCGGGGCCGGG-GCCUGGGCcgGc -3'
miRNA:   3'- aaauGCUCCGGCUCaCGGGCCUGuaU- -5'
23580 5' -56.4 NC_005261.1 + 98362 0.71 0.583927
Target:  5'- --cGCGGccugcuGGCCGuGUGCCUGGGCGc- -3'
miRNA:   3'- aaaUGCU------CCGGCuCACGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 78373 0.71 0.532706
Target:  5'- -cUACGAGGCCGAcGU-CCCGcGCAUGg -3'
miRNA:   3'- aaAUGCUCCGGCU-CAcGGGCcUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 103772 0.7 0.646485
Target:  5'- -gUACGGGGCCcccggcccGUGCCCGGcGCGUu -3'
miRNA:   3'- aaAUGCUCCGGcu------CACGGGCC-UGUAu -5'
23580 5' -56.4 NC_005261.1 + 70043 0.7 0.646485
Target:  5'- --gGCGGGGgCGAGgggGCCCGcGGCGc- -3'
miRNA:   3'- aaaUGCUCCgGCUCa--CGGGC-CUGUau -5'
23580 5' -56.4 NC_005261.1 + 24624 0.7 0.646485
Target:  5'- --aACuuGGCCagcGGGUGCCCGGGCGc- -3'
miRNA:   3'- aaaUGcuCCGG---CUCACGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 79350 0.7 0.625591
Target:  5'- -cUGCGAGGCCc---GCCCGGACc-- -3'
miRNA:   3'- aaAUGCUCCGGcucaCGGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 96115 0.7 0.615147
Target:  5'- --gACGAGGCCGGGcUGCugggCCGGcACAUc -3'
miRNA:   3'- aaaUGCUCCGGCUC-ACG----GGCC-UGUAu -5'
23580 5' -56.4 NC_005261.1 + 79905 0.7 0.604717
Target:  5'- --cGCGAGGC--GGUGCUCGGGCGg- -3'
miRNA:   3'- aaaUGCUCCGgcUCACGGGCCUGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.