miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23581 3' -57.9 NC_005261.1 + 70232 0.65 0.856457
Target:  5'- gGCGCCgcgcgcaaacUCGACCUCggcGCGCUuguCCg -3'
miRNA:   3'- -CGCGGacu-------AGCUGGAGa--CGCGGcu-GG- -5'
23581 3' -57.9 NC_005261.1 + 118090 0.65 0.854929
Target:  5'- uCGUCUGcuggCGGCCcgccgcgcagacgCUGCGCCG-CCg -3'
miRNA:   3'- cGCGGACua--GCUGGa------------GACGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 70569 0.66 0.81775
Target:  5'- cGCGCCUGG-CG-CCgc-GCGCgGACg -3'
miRNA:   3'- -CGCGGACUaGCuGGagaCGCGgCUGg -5'
23581 3' -57.9 NC_005261.1 + 106174 0.66 0.82615
Target:  5'- cGCGCuCUGcgCGGCCaugUCcuUGCGCCcgucgaGCCg -3'
miRNA:   3'- -CGCG-GACuaGCUGG---AG--ACGCGGc-----UGG- -5'
23581 3' -57.9 NC_005261.1 + 19855 0.66 0.82615
Target:  5'- aGCGCCUcGGgccgCGcGCCcCaGCGCCcGGCCg -3'
miRNA:   3'- -CGCGGA-CUa---GC-UGGaGaCGCGG-CUGG- -5'
23581 3' -57.9 NC_005261.1 + 66971 0.66 0.81775
Target:  5'- cGCGCgugCUGcUCGGCgCggggcucggCUGCGCCG-CCg -3'
miRNA:   3'- -CGCG---GACuAGCUG-Ga--------GACGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 116429 0.66 0.81775
Target:  5'- cGgGCCcGGccCGGCCggcggCUGCGgCGGCCc -3'
miRNA:   3'- -CgCGGaCUa-GCUGGa----GACGCgGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 67556 0.66 0.82615
Target:  5'- aCGCCUGGcuggaggugCGGCCcgCggccgcgGCGCCGAaCCu -3'
miRNA:   3'- cGCGGACUa--------GCUGGa-Ga------CGCGGCU-GG- -5'
23581 3' -57.9 NC_005261.1 + 10355 0.66 0.81775
Target:  5'- gGCGCCgGcgCGACucccgCUCgugcccugGCGCCGcgACCg -3'
miRNA:   3'- -CGCGGaCuaGCUG-----GAGa-------CGCGGC--UGG- -5'
23581 3' -57.9 NC_005261.1 + 19291 0.66 0.81775
Target:  5'- uGCGCCg---CGGCCagccgCgcgGCGCCGcGCCc -3'
miRNA:   3'- -CGCGGacuaGCUGGa----Ga--CGCGGC-UGG- -5'
23581 3' -57.9 NC_005261.1 + 137363 0.66 0.82615
Target:  5'- cUGUCUGAgcgCGACCUCUGCuUCuuCCu -3'
miRNA:   3'- cGCGGACUa--GCUGGAGACGcGGcuGG- -5'
23581 3' -57.9 NC_005261.1 + 83715 0.66 0.816901
Target:  5'- cGCGUCUGAcgccgUCGccggagggcgccuGCgUUUGCGCCuGCCg -3'
miRNA:   3'- -CGCGGACU-----AGC-------------UGgAGACGCGGcUGG- -5'
23581 3' -57.9 NC_005261.1 + 21570 0.66 0.82615
Target:  5'- gGCGCCgcggagcaGGUCGGCggCgggcGCGCgGGCCu -3'
miRNA:   3'- -CGCGGa-------CUAGCUGgaGa---CGCGgCUGG- -5'
23581 3' -57.9 NC_005261.1 + 81873 0.66 0.823648
Target:  5'- uGCGCCUcgccGGUgccgguauuuaaccCGGCCUCgGCGCgCG-CCa -3'
miRNA:   3'- -CGCGGA----CUA--------------GCUGGAGaCGCG-GCuGG- -5'
23581 3' -57.9 NC_005261.1 + 106343 0.66 0.82281
Target:  5'- cGCGCgUaagCGGCCUCggcgcgcgcgaagGCGCCgGGCCc -3'
miRNA:   3'- -CGCGgAcuaGCUGGAGa------------CGCGG-CUGG- -5'
23581 3' -57.9 NC_005261.1 + 14272 0.66 0.81775
Target:  5'- aGCGCUcgcgGAgCGGgCgCUGCGCUGGCUg -3'
miRNA:   3'- -CGCGGa---CUaGCUgGaGACGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 136494 0.66 0.82615
Target:  5'- cGCGCCUGGgcccgCGcACCgcgGUGCCcguGCCg -3'
miRNA:   3'- -CGCGGACUa----GC-UGGagaCGCGGc--UGG- -5'
23581 3' -57.9 NC_005261.1 + 38773 0.66 0.83438
Target:  5'- aGCGCCgccgcgGGUCGGCC-C-GCGCUcuuCCg -3'
miRNA:   3'- -CGCGGa-----CUAGCUGGaGaCGCGGcu-GG- -5'
23581 3' -57.9 NC_005261.1 + 88264 0.66 0.82615
Target:  5'- gGCGCCgggGAU-GACgaCgGCGCCG-CCu -3'
miRNA:   3'- -CGCGGa--CUAgCUGgaGaCGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 68450 0.66 0.81775
Target:  5'- cGCGCCgcggGAgCGGCUcagUCcccgGCGCCGcCCc -3'
miRNA:   3'- -CGCGGa---CUaGCUGG---AGa---CGCGGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.