miRNA display CGI


Results 21 - 40 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23581 3' -57.9 NC_005261.1 + 82968 0.66 0.8503
Target:  5'- cGCGCCaGGgggcgcaGACCUCcucGCGgCGGCUg -3'
miRNA:   3'- -CGCGGaCUag-----CUGGAGa--CGCgGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 84767 0.66 0.815198
Target:  5'- cGCGCCUGcugcgucccgcccggCGACCUCccGaCGcCCGACg -3'
miRNA:   3'- -CGCGGACua-------------GCUGGAGa-C-GC-GGCUGg -5'
23581 3' -57.9 NC_005261.1 + 106174 0.66 0.82615
Target:  5'- cGCGCuCUGcgCGGCCaugUCcuUGCGCCcgucgaGCCg -3'
miRNA:   3'- -CGCG-GACuaGCUGG---AG--ACGCGGc-----UGG- -5'
23581 3' -57.9 NC_005261.1 + 70569 0.66 0.81775
Target:  5'- cGCGCCUGG-CG-CCgc-GCGCgGACg -3'
miRNA:   3'- -CGCGGACUaGCuGGagaCGCGgCUGg -5'
23581 3' -57.9 NC_005261.1 + 19291 0.66 0.81775
Target:  5'- uGCGCCg---CGGCCagccgCgcgGCGCCGcGCCc -3'
miRNA:   3'- -CGCGGacuaGCUGGa----Ga--CGCGGC-UGG- -5'
23581 3' -57.9 NC_005261.1 + 64857 0.66 0.83438
Target:  5'- cGCGCgUGGccgCGugCUg-GCGCCG-CCu -3'
miRNA:   3'- -CGCGgACUa--GCugGAgaCGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 83715 0.66 0.816901
Target:  5'- cGCGUCUGAcgccgUCGccggagggcgccuGCgUUUGCGCCuGCCg -3'
miRNA:   3'- -CGCGGACU-----AGC-------------UGgAGACGCGGcUGG- -5'
23581 3' -57.9 NC_005261.1 + 56715 0.66 0.8503
Target:  5'- aGCGCCUGGcgccggCGGCggCgcgcGCGCCGcgcuaGCCg -3'
miRNA:   3'- -CGCGGACUa-----GCUGgaGa---CGCGGC-----UGG- -5'
23581 3' -57.9 NC_005261.1 + 10355 0.66 0.81775
Target:  5'- gGCGCCgGcgCGACucccgCUCgugcccugGCGCCGcgACCg -3'
miRNA:   3'- -CGCGGaCuaGCUG-----GAGa-------CGCGGC--UGG- -5'
23581 3' -57.9 NC_005261.1 + 134441 0.66 0.81775
Target:  5'- uGCGCgagCUGGcgGACCgCUGCGCugCGGCCu -3'
miRNA:   3'- -CGCG---GACUagCUGGaGACGCG--GCUGG- -5'
23581 3' -57.9 NC_005261.1 + 19855 0.66 0.82615
Target:  5'- aGCGCCUcGGgccgCGcGCCcCaGCGCCcGGCCg -3'
miRNA:   3'- -CGCGGA-CUa---GC-UGGaGaCGCGG-CUGG- -5'
23581 3' -57.9 NC_005261.1 + 68450 0.66 0.81775
Target:  5'- cGCGCCgcggGAgCGGCUcagUCcccgGCGCCGcCCc -3'
miRNA:   3'- -CGCGGa---CUaGCUGG---AGa---CGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 87248 0.66 0.842432
Target:  5'- cGCGCCgccGUCGGCCgagagguuUCgcGCGCCguagucGACCa -3'
miRNA:   3'- -CGCGGac-UAGCUGG--------AGa-CGCGG------CUGG- -5'
23581 3' -57.9 NC_005261.1 + 74881 0.66 0.842432
Target:  5'- cGCGCCaccgUGAacccgUgGGCCUCgcaGCGCCacucguacggcGACCg -3'
miRNA:   3'- -CGCGG----ACU-----AgCUGGAGa--CGCGG-----------CUGG- -5'
23581 3' -57.9 NC_005261.1 + 66150 0.66 0.842432
Target:  5'- cGCGCCaccucgugGAcuaCGACCUg-GUGCCGAgCCg -3'
miRNA:   3'- -CGCGGa-------CUa--GCUGGAgaCGCGGCU-GG- -5'
23581 3' -57.9 NC_005261.1 + 72111 0.66 0.83438
Target:  5'- gGCGCUgacGAUgGGCaaggcgCUGCGCgGGCUg -3'
miRNA:   3'- -CGCGGa--CUAgCUGga----GACGCGgCUGG- -5'
23581 3' -57.9 NC_005261.1 + 64517 0.66 0.83438
Target:  5'- cGCGCacgc-CGACCgcggucCUGCGCCauGGCCg -3'
miRNA:   3'- -CGCGgacuaGCUGGa-----GACGCGG--CUGG- -5'
23581 3' -57.9 NC_005261.1 + 58830 0.66 0.842432
Target:  5'- cGgGCCUGcUCGACUacagcgagaUCcaGCGCCGcaACCa -3'
miRNA:   3'- -CgCGGACuAGCUGG---------AGa-CGCGGC--UGG- -5'
23581 3' -57.9 NC_005261.1 + 66971 0.66 0.81775
Target:  5'- cGCGCgugCUGcUCGGCgCggggcucggCUGCGCCG-CCg -3'
miRNA:   3'- -CGCG---GACuAGCUG-Ga--------GACGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 38773 0.66 0.83438
Target:  5'- aGCGCCgccgcgGGUCGGCC-C-GCGCUcuuCCg -3'
miRNA:   3'- -CGCGGa-----CUAGCUGGaGaCGCGGcu-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.