miRNA display CGI


Results 21 - 40 of 436 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23581 3' -57.9 NC_005261.1 + 4850 0.67 0.809186
Target:  5'- cGCGCCg---CaGCCUCaaggGCGgCGGCCa -3'
miRNA:   3'- -CGCGGacuaGcUGGAGa---CGCgGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 4946 0.68 0.754837
Target:  5'- cGCGCCg---CGGCCcagGCGCCcccGGCCg -3'
miRNA:   3'- -CGCGGacuaGCUGGagaCGCGG---CUGG- -5'
23581 3' -57.9 NC_005261.1 + 5013 0.68 0.735793
Target:  5'- aGgGCCccaGcUCGGCCUCgacgGCGUCGGCg -3'
miRNA:   3'- -CgCGGa--CuAGCUGGAGa---CGCGGCUGg -5'
23581 3' -57.9 NC_005261.1 + 6336 0.68 0.754837
Target:  5'- cGCGuacccCCUGcccacCGGCCUC-GCGCCGGuCCg -3'
miRNA:   3'- -CGC-----GGACua---GCUGGAGaCGCGGCU-GG- -5'
23581 3' -57.9 NC_005261.1 + 6345 0.66 0.8503
Target:  5'- cGCGCCgucgCGugCg--GCGgCGGCCg -3'
miRNA:   3'- -CGCGGacuaGCugGagaCGCgGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 6995 0.7 0.626671
Target:  5'- -gGCgaGGUCaGCCUCgaUGCGCgCGGCCa -3'
miRNA:   3'- cgCGgaCUAGcUGGAG--ACGCG-GCUGG- -5'
23581 3' -57.9 NC_005261.1 + 7614 0.74 0.417204
Target:  5'- -gGCCgcugGAUCuGCCUCUGCuGCCG-CCg -3'
miRNA:   3'- cgCGGa---CUAGcUGGAGACG-CGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 10355 0.66 0.81775
Target:  5'- gGCGCCgGcgCGACucccgCUCgugcccugGCGCCGcgACCg -3'
miRNA:   3'- -CGCGGaCuaGCUG-----GAGa-------CGCGGC--UGG- -5'
23581 3' -57.9 NC_005261.1 + 10390 0.67 0.764207
Target:  5'- cGCGCgCUcGUCGGCUucuuUCUGC-UCGGCCa -3'
miRNA:   3'- -CGCG-GAcUAGCUGG----AGACGcGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 10489 0.68 0.706595
Target:  5'- cCGCUgcacCGGCUUUUGCGCgCGGCCg -3'
miRNA:   3'- cGCGGacuaGCUGGAGACGCG-GCUGG- -5'
23581 3' -57.9 NC_005261.1 + 11912 0.66 0.81775
Target:  5'- cGgGCCcGGccCGGCCggcggCUGCGgCGGCCc -3'
miRNA:   3'- -CgCGGaCUa-GCUGGa----GACGCgGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 12591 0.7 0.595548
Target:  5'- gGCGCCUagcggagGAUgGACUUCagccGCGCCG-CCa -3'
miRNA:   3'- -CGCGGA-------CUAgCUGGAGa---CGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 12800 0.71 0.537155
Target:  5'- aCGCCgcuagggaUGggCGGCCUgaGCGCCGcCCg -3'
miRNA:   3'- cGCGG--------ACuaGCUGGAgaCGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 13267 0.67 0.791603
Target:  5'- cGCGCgauUUGAgugCGGgCUCcaggGCGCCGGCa -3'
miRNA:   3'- -CGCG---GACUa--GCUgGAGa---CGCGGCUGg -5'
23581 3' -57.9 NC_005261.1 + 14000 0.67 0.791603
Target:  5'- cCGCCgGAUCgGGCCgcucggugagcUCUGCGauGGCCa -3'
miRNA:   3'- cGCGGaCUAG-CUGG-----------AGACGCggCUGG- -5'
23581 3' -57.9 NC_005261.1 + 14112 0.72 0.527438
Target:  5'- uGCGCgUGAUgcUGACUgcgGUGCCGGCCc -3'
miRNA:   3'- -CGCGgACUA--GCUGGagaCGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 14272 0.66 0.81775
Target:  5'- aGCGCUcgcgGAgCGGgCgCUGCGCUGGCUg -3'
miRNA:   3'- -CGCGGa---CUaGCUgGaGACGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 14967 0.79 0.206517
Target:  5'- cGUGCCUGGggCGACUgcgCggccGCGCCGGCCg -3'
miRNA:   3'- -CGCGGACUa-GCUGGa--Ga---CGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 14999 0.73 0.434624
Target:  5'- cGCGCCUGggCGGCCgcuagGCGgCaGGCCg -3'
miRNA:   3'- -CGCGGACuaGCUGGaga--CGCgG-CUGG- -5'
23581 3' -57.9 NC_005261.1 + 15373 0.69 0.676849
Target:  5'- gGCGCUcGG-CGcCCUCgGCGCCG-CCg -3'
miRNA:   3'- -CGCGGaCUaGCuGGAGaCGCGGCuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.