miRNA display CGI


Results 21 - 40 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23581 3' -57.9 NC_005261.1 + 79738 0.74 0.408655
Target:  5'- gGCGCCaaaagCGGCCgc-GCGCCGGCCu -3'
miRNA:   3'- -CGCGGacua-GCUGGagaCGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 7614 0.74 0.417204
Target:  5'- -gGCCgcugGAUCuGCCUCUGCuGCCG-CCg -3'
miRNA:   3'- cgCGGa---CUAGcUGGAGACG-CGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 104266 0.74 0.417204
Target:  5'- aGCGCCgcgGucUCGGCggCUGCGCgGGCCu -3'
miRNA:   3'- -CGCGGa--Cu-AGCUGgaGACGCGgCUGG- -5'
23581 3' -57.9 NC_005261.1 + 112131 0.74 0.417204
Target:  5'- -gGCCgcugGAUCuGCCUCUGCuGCCG-CCg -3'
miRNA:   3'- cgCGGa---CUAGcUGGAGACG-CGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 103321 0.74 0.417204
Target:  5'- uGCGCCgcgcccCGACCUCcGCGuCCGACUc -3'
miRNA:   3'- -CGCGGacua--GCUGGAGaCGC-GGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 135771 0.73 0.425861
Target:  5'- gGCGCCcGGcgcucgccuUCGACCcCgagGCGCUGGCCg -3'
miRNA:   3'- -CGCGGaCU---------AGCUGGaGa--CGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 31254 0.73 0.425861
Target:  5'- gGCGCCcGGcgcucgccuUCGACCcCgagGCGCUGGCCg -3'
miRNA:   3'- -CGCGGaCU---------AGCUGGaGa--CGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 43365 0.73 0.425861
Target:  5'- gGUGCCgcugcggcgGcAUCGGCCUCgcgGUGCCGGCa -3'
miRNA:   3'- -CGCGGa--------C-UAGCUGGAGa--CGCGGCUGg -5'
23581 3' -57.9 NC_005261.1 + 14999 0.73 0.434624
Target:  5'- cGCGCCUGggCGGCCgcuagGCGgCaGGCCg -3'
miRNA:   3'- -CGCGGACuaGCUGGaga--CGCgG-CUGG- -5'
23581 3' -57.9 NC_005261.1 + 103242 0.73 0.434624
Target:  5'- gGUGUUUG-UCGACCUCUaGUGCUGACa -3'
miRNA:   3'- -CGCGGACuAGCUGGAGA-CGCGGCUGg -5'
23581 3' -57.9 NC_005261.1 + 102823 0.73 0.434624
Target:  5'- cGCGCC-GGUCugcGCCUC-GCGCCGcGCCa -3'
miRNA:   3'- -CGCGGaCUAGc--UGGAGaCGCGGC-UGG- -5'
23581 3' -57.9 NC_005261.1 + 45409 0.73 0.443491
Target:  5'- cGUGCCUGcugCGGCgC-CUGCGCCcGCCg -3'
miRNA:   3'- -CGCGGACua-GCUG-GaGACGCGGcUGG- -5'
23581 3' -57.9 NC_005261.1 + 59859 0.73 0.443491
Target:  5'- uGCGCggGAcgUCGGCCUCguacggGUGCCGGCg -3'
miRNA:   3'- -CGCGgaCU--AGCUGGAGa-----CGCGGCUGg -5'
23581 3' -57.9 NC_005261.1 + 103445 0.73 0.443491
Target:  5'- cGCGCCUcgcGGUCGGCCgCcGCGCCcgucGCCa -3'
miRNA:   3'- -CGCGGA---CUAGCUGGaGaCGCGGc---UGG- -5'
23581 3' -57.9 NC_005261.1 + 36791 0.73 0.461524
Target:  5'- uGCGCCga---GA-CUUUGCGCCGGCCg -3'
miRNA:   3'- -CGCGGacuagCUgGAGACGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 47002 0.73 0.461524
Target:  5'- aGCGCCgGGUCGGCgaUCUugGCGUgGGCCu -3'
miRNA:   3'- -CGCGGaCUAGCUGg-AGA--CGCGgCUGG- -5'
23581 3' -57.9 NC_005261.1 + 97157 0.73 0.469765
Target:  5'- gGCGCCgGccCGGCCggcugggUCgcggGCGCCGGCCg -3'
miRNA:   3'- -CGCGGaCuaGCUGG-------AGa---CGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 35693 0.73 0.470685
Target:  5'- gGCGCCUGGggccgcaggCGGCCaagCUGCacGCgGACCu -3'
miRNA:   3'- -CGCGGACUa--------GCUGGa--GACG--CGgCUGG- -5'
23581 3' -57.9 NC_005261.1 + 3014 0.73 0.470685
Target:  5'- cGCGCUcGGcCGuggcCCUCUGCGCCG-CCu -3'
miRNA:   3'- -CGCGGaCUaGCu---GGAGACGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 84562 0.72 0.479008
Target:  5'- aGCGCCUGGagcaCGGCCccguagacggccgUCUGCGCCagcgcGCCg -3'
miRNA:   3'- -CGCGGACUa---GCUGG-------------AGACGCGGc----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.