miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23581 3' -57.9 NC_005261.1 + 113657 1.14 0.000898
Target:  5'- aGCGCCUGAUCGACCUCUGCGCCGACCg -3'
miRNA:   3'- -CGCGGACUAGCUGGAGACGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 95949 0.82 0.138739
Target:  5'- cGCGCCcgccggGAUCGACCcCagcGCGCCGGCCa -3'
miRNA:   3'- -CGCGGa-----CUAGCUGGaGa--CGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 94847 0.79 0.191929
Target:  5'- cGCGCCUGGccUCGGCgCUC-GCGCaCGGCCc -3'
miRNA:   3'- -CGCGGACU--AGCUG-GAGaCGCG-GCUGG- -5'
23581 3' -57.9 NC_005261.1 + 38508 0.79 0.191929
Target:  5'- cGCGCCUGAcgCGGCCac-GCGCgCGACCg -3'
miRNA:   3'- -CGCGGACUa-GCUGGagaCGCG-GCUGG- -5'
23581 3' -57.9 NC_005261.1 + 102270 0.79 0.201551
Target:  5'- aGCGCCcGGUCGGCCUgCcGCGCCagcGGCCg -3'
miRNA:   3'- -CGCGGaCUAGCUGGA-GaCGCGG---CUGG- -5'
23581 3' -57.9 NC_005261.1 + 64422 0.79 0.201551
Target:  5'- gGCGCggGcgCGGCUUCUgcGCGCCGACCg -3'
miRNA:   3'- -CGCGgaCuaGCUGGAGA--CGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 14967 0.79 0.206517
Target:  5'- cGUGCCUGGggCGACUgcgCggccGCGCCGGCCg -3'
miRNA:   3'- -CGCGGACUa-GCUGGa--Ga---CGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 119516 0.78 0.244305
Target:  5'- cGCGCCcGA-CGAUCUCUGCuucGCCGACg -3'
miRNA:   3'- -CGCGGaCUaGCUGGAGACG---CGGCUGg -5'
23581 3' -57.9 NC_005261.1 + 60575 0.78 0.25015
Target:  5'- uGCGCCUGcaggcgcCGGCCgUCggcgaugGCGCCGGCCa -3'
miRNA:   3'- -CGCGGACua-----GCUGG-AGa------CGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 71868 0.77 0.287663
Target:  5'- gGCGCCgggGcgCGAgCUC-GCGCUGGCCa -3'
miRNA:   3'- -CGCGGa--CuaGCUgGAGaCGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 43410 0.76 0.301116
Target:  5'- gGCGCCggGggCGGCCUCcGcCGCCGGCg -3'
miRNA:   3'- -CGCGGa-CuaGCUGGAGaC-GCGGCUGg -5'
23581 3' -57.9 NC_005261.1 + 88035 0.76 0.315049
Target:  5'- gGUGCCUGGgggCGGuCCagucacgcgcCUGCGCCGGCCg -3'
miRNA:   3'- -CGCGGACUa--GCU-GGa---------GACGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 133958 0.76 0.322196
Target:  5'- gGCGCaUGuUCGGCCUUUGCcgcaacgacGCCGACCu -3'
miRNA:   3'- -CGCGgACuAGCUGGAGACG---------CGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 62090 0.74 0.383676
Target:  5'- uGCGCCgccaCGACCUCcacgacggGCGCCGGCg -3'
miRNA:   3'- -CGCGGacuaGCUGGAGa-------CGCGGCUGg -5'
23581 3' -57.9 NC_005261.1 + 104147 0.74 0.391889
Target:  5'- cCGCCaGGUCGGCCaCcGCGCCGuCCg -3'
miRNA:   3'- cGCGGaCUAGCUGGaGaCGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 90548 0.74 0.391889
Target:  5'- gGCGCCgcgGG-CGGCCgugCUGCGCuCGGCg -3'
miRNA:   3'- -CGCGGa--CUaGCUGGa--GACGCG-GCUGg -5'
23581 3' -57.9 NC_005261.1 + 87360 0.74 0.400216
Target:  5'- aGCGCCaGcgCGGCgaagGCGCCGACCu -3'
miRNA:   3'- -CGCGGaCuaGCUGgagaCGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 102448 0.74 0.400216
Target:  5'- cGCGCCgcc-CGGCCUCggcgcgcagGCGCCgGACCu -3'
miRNA:   3'- -CGCGGacuaGCUGGAGa--------CGCGG-CUGG- -5'
23581 3' -57.9 NC_005261.1 + 118808 0.74 0.400216
Target:  5'- uGUGCCUGggCGACUUCgGCgcggcacacggGCCGAUCa -3'
miRNA:   3'- -CGCGGACuaGCUGGAGaCG-----------CGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 89350 0.74 0.400216
Target:  5'- gGCGgCUGuUCGGCggCUGCGCCG-CCa -3'
miRNA:   3'- -CGCgGACuAGCUGgaGACGCGGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.