Results 1 - 20 of 436 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23581 | 3' | -57.9 | NC_005261.1 | + | 113657 | 1.14 | 0.000898 |
Target: 5'- aGCGCCUGAUCGACCUCUGCGCCGACCg -3' miRNA: 3'- -CGCGGACUAGCUGGAGACGCGGCUGG- -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 95949 | 0.82 | 0.138739 |
Target: 5'- cGCGCCcgccggGAUCGACCcCagcGCGCCGGCCa -3' miRNA: 3'- -CGCGGa-----CUAGCUGGaGa--CGCGGCUGG- -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 38508 | 0.79 | 0.191929 |
Target: 5'- cGCGCCUGAcgCGGCCac-GCGCgCGACCg -3' miRNA: 3'- -CGCGGACUa-GCUGGagaCGCG-GCUGG- -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 94847 | 0.79 | 0.191929 |
Target: 5'- cGCGCCUGGccUCGGCgCUC-GCGCaCGGCCc -3' miRNA: 3'- -CGCGGACU--AGCUG-GAGaCGCG-GCUGG- -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 64422 | 0.79 | 0.201551 |
Target: 5'- gGCGCggGcgCGGCUUCUgcGCGCCGACCg -3' miRNA: 3'- -CGCGgaCuaGCUGGAGA--CGCGGCUGG- -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 102270 | 0.79 | 0.201551 |
Target: 5'- aGCGCCcGGUCGGCCUgCcGCGCCagcGGCCg -3' miRNA: 3'- -CGCGGaCUAGCUGGA-GaCGCGG---CUGG- -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 14967 | 0.79 | 0.206517 |
Target: 5'- cGUGCCUGGggCGACUgcgCggccGCGCCGGCCg -3' miRNA: 3'- -CGCGGACUa-GCUGGa--Ga---CGCGGCUGG- -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 119516 | 0.78 | 0.244305 |
Target: 5'- cGCGCCcGA-CGAUCUCUGCuucGCCGACg -3' miRNA: 3'- -CGCGGaCUaGCUGGAGACG---CGGCUGg -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 60575 | 0.78 | 0.25015 |
Target: 5'- uGCGCCUGcaggcgcCGGCCgUCggcgaugGCGCCGGCCa -3' miRNA: 3'- -CGCGGACua-----GCUGG-AGa------CGCGGCUGG- -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 71868 | 0.77 | 0.287663 |
Target: 5'- gGCGCCgggGcgCGAgCUC-GCGCUGGCCa -3' miRNA: 3'- -CGCGGa--CuaGCUgGAGaCGCGGCUGG- -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 43410 | 0.76 | 0.301116 |
Target: 5'- gGCGCCggGggCGGCCUCcGcCGCCGGCg -3' miRNA: 3'- -CGCGGa-CuaGCUGGAGaC-GCGGCUGg -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 88035 | 0.76 | 0.315049 |
Target: 5'- gGUGCCUGGgggCGGuCCagucacgcgcCUGCGCCGGCCg -3' miRNA: 3'- -CGCGGACUa--GCU-GGa---------GACGCGGCUGG- -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 133958 | 0.76 | 0.322196 |
Target: 5'- gGCGCaUGuUCGGCCUUUGCcgcaacgacGCCGACCu -3' miRNA: 3'- -CGCGgACuAGCUGGAGACG---------CGGCUGG- -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 62090 | 0.74 | 0.383676 |
Target: 5'- uGCGCCgccaCGACCUCcacgacggGCGCCGGCg -3' miRNA: 3'- -CGCGGacuaGCUGGAGa-------CGCGGCUGg -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 104147 | 0.74 | 0.391889 |
Target: 5'- cCGCCaGGUCGGCCaCcGCGCCGuCCg -3' miRNA: 3'- cGCGGaCUAGCUGGaGaCGCGGCuGG- -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 90548 | 0.74 | 0.391889 |
Target: 5'- gGCGCCgcgGG-CGGCCgugCUGCGCuCGGCg -3' miRNA: 3'- -CGCGGa--CUaGCUGGa--GACGCG-GCUGg -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 118808 | 0.74 | 0.400216 |
Target: 5'- uGUGCCUGggCGACUUCgGCgcggcacacggGCCGAUCa -3' miRNA: 3'- -CGCGGACuaGCUGGAGaCG-----------CGGCUGG- -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 87360 | 0.74 | 0.400216 |
Target: 5'- aGCGCCaGcgCGGCgaagGCGCCGACCu -3' miRNA: 3'- -CGCGGaCuaGCUGgagaCGCGGCUGG- -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 102448 | 0.74 | 0.400216 |
Target: 5'- cGCGCCgcc-CGGCCUCggcgcgcagGCGCCgGACCu -3' miRNA: 3'- -CGCGGacuaGCUGGAGa--------CGCGG-CUGG- -5' |
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23581 | 3' | -57.9 | NC_005261.1 | + | 89350 | 0.74 | 0.400216 |
Target: 5'- gGCGgCUGuUCGGCggCUGCGCCG-CCa -3' miRNA: 3'- -CGCgGACuAGCUGgaGACGCGGCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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