miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23581 3' -57.9 NC_005261.1 + 322 0.67 0.764207
Target:  5'- gGCGgCUGcggCGGCggCUGCGgCGGCCc -3'
miRNA:   3'- -CGCgGACua-GCUGgaGACGCgGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 1157 0.68 0.726135
Target:  5'- uGCGCCgccaugGGUgccCGcGCCUCcGCGCCuGCCg -3'
miRNA:   3'- -CGCGGa-----CUA---GC-UGGAGaCGCGGcUGG- -5'
23581 3' -57.9 NC_005261.1 + 1647 0.72 0.489277
Target:  5'- uGCGCCgGG-CG-UCUCUGCGCCcGCCc -3'
miRNA:   3'- -CGCGGaCUaGCuGGAGACGCGGcUGG- -5'
23581 3' -57.9 NC_005261.1 + 1657 0.66 0.82615
Target:  5'- cGCGCuCUGcgCGGCCaugUCcuUGCGCCcgucgaGCCg -3'
miRNA:   3'- -CGCG-GACuaGCUGG---AG--ACGCGGc-----UGG- -5'
23581 3' -57.9 NC_005261.1 + 1727 0.66 0.83438
Target:  5'- uCGCCgGAgcaGGCgUCgGCGCCGAgCu -3'
miRNA:   3'- cGCGGaCUag-CUGgAGaCGCGGCUgG- -5'
23581 3' -57.9 NC_005261.1 + 1826 0.66 0.82281
Target:  5'- cGCGCgUaagCGGCCUCggcgcgcgcgaagGCGCCgGGCCc -3'
miRNA:   3'- -CGCGgAcuaGCUGGAGa------------CGCGG-CUGG- -5'
23581 3' -57.9 NC_005261.1 + 2449 0.67 0.764207
Target:  5'- aGCGCCUcggGGUCGAaggCgaGCGCCGggcGCCa -3'
miRNA:   3'- -CGCGGA---CUAGCUggaGa-CGCGGC---UGG- -5'
23581 3' -57.9 NC_005261.1 + 2515 0.7 0.606573
Target:  5'- cGCGCCg---CGACCUCgggGCGgCaguaGGCCg -3'
miRNA:   3'- -CGCGGacuaGCUGGAGa--CGC-Gg---CUGG- -5'
23581 3' -57.9 NC_005261.1 + 2693 0.69 0.686811
Target:  5'- cGCGCCggcuuUUGGCCg--GCGCCgGGCCc -3'
miRNA:   3'- -CGCGGacu--AGCUGGagaCGCGG-CUGG- -5'
23581 3' -57.9 NC_005261.1 + 2995 0.68 0.745363
Target:  5'- -gGCCUGG-CGGCC-CgGCGCCGGg- -3'
miRNA:   3'- cgCGGACUaGCUGGaGaCGCGGCUgg -5'
23581 3' -57.9 NC_005261.1 + 3014 0.73 0.470685
Target:  5'- cGCGCUcGGcCGuggcCCUCUGCGCCG-CCu -3'
miRNA:   3'- -CGCGGaCUaGCu---GGAGACGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 3192 0.68 0.754837
Target:  5'- cCGCCgcagGcGUCGGCCUC-GCcGCCGcgGCCg -3'
miRNA:   3'- cGCGGa---C-UAGCUGGAGaCG-CGGC--UGG- -5'
23581 3' -57.9 NC_005261.1 + 3247 0.67 0.764207
Target:  5'- gGCGCCccggCGGCCccguccucgccgUCUGCGUCG-CCg -3'
miRNA:   3'- -CGCGGacuaGCUGG------------AGACGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 3342 0.7 0.606573
Target:  5'- cGCGCCgcggCGcCCggcGCGCCGGCCu -3'
miRNA:   3'- -CGCGGacuaGCuGGagaCGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 3376 0.67 0.809186
Target:  5'- cCGCgaGcgCGGCCgccagCcGCGCCGGCa -3'
miRNA:   3'- cGCGgaCuaGCUGGa----GaCGCGGCUGg -5'
23581 3' -57.9 NC_005261.1 + 3504 0.66 0.83438
Target:  5'- cGCGCCgccaGcgCGgccGCCUCcagcGCGgCGGCCg -3'
miRNA:   3'- -CGCGGa---CuaGC---UGGAGa---CGCgGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 3911 0.72 0.517786
Target:  5'- gGCGCCcGcgCcGCCg--GCGCCGGCCu -3'
miRNA:   3'- -CGCGGaCuaGcUGGagaCGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 4026 0.66 0.8503
Target:  5'- cCGCCg---CGACCcgcGCGCCGAgCCg -3'
miRNA:   3'- cGCGGacuaGCUGGagaCGCGGCU-GG- -5'
23581 3' -57.9 NC_005261.1 + 4054 0.67 0.809186
Target:  5'- cGCGuUCUGcgCGGCCaugGCGuccCCGACCg -3'
miRNA:   3'- -CGC-GGACuaGCUGGagaCGC---GGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 4484 0.68 0.754837
Target:  5'- gGCGCCg---CGGCgUagcCUGCGCgGGCCc -3'
miRNA:   3'- -CGCGGacuaGCUGgA---GACGCGgCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.