miRNA display CGI


Results 1 - 20 of 436 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23581 3' -57.9 NC_005261.1 + 137993 0.67 0.764207
Target:  5'- gGCGgCUGcggCGGCggCUGCGgCGGCCc -3'
miRNA:   3'- -CGCgGACua-GCUGgaGACGCgGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 137363 0.66 0.82615
Target:  5'- cUGUCUGAgcgCGACCUCUGCuUCuuCCu -3'
miRNA:   3'- cGCGGACUa--GCUGGAGACGcGGcuGG- -5'
23581 3' -57.9 NC_005261.1 + 137039 0.66 0.8503
Target:  5'- cGCGCCgcgccCGGCCcCgGCcCCGGCCg -3'
miRNA:   3'- -CGCGGacua-GCUGGaGaCGcGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 136848 0.68 0.735793
Target:  5'- gGCGCCcgGcgUGGCCUggGaCGCgGACCa -3'
miRNA:   3'- -CGCGGa-CuaGCUGGAgaC-GCGgCUGG- -5'
23581 3' -57.9 NC_005261.1 + 136494 0.66 0.82615
Target:  5'- cGCGCCUGGgcccgCGcACCgcgGUGCCcguGCCg -3'
miRNA:   3'- -CGCGGACUa----GC-UGGagaCGCGGc--UGG- -5'
23581 3' -57.9 NC_005261.1 + 136335 0.66 0.8503
Target:  5'- -gGCCUGAgCGGCgCgcgCUggcgcGCGCCGugCu -3'
miRNA:   3'- cgCGGACUaGCUG-Ga--GA-----CGCGGCugG- -5'
23581 3' -57.9 NC_005261.1 + 136169 0.7 0.636729
Target:  5'- gGCGC--GGUCGAguaCCUCUGCcugcgGCUGGCCg -3'
miRNA:   3'- -CGCGgaCUAGCU---GGAGACG-----CGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 135981 0.67 0.809186
Target:  5'- aGCGCCgg--CGGCCUgaGUGgCCG-CCg -3'
miRNA:   3'- -CGCGGacuaGCUGGAgaCGC-GGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 135771 0.73 0.425861
Target:  5'- gGCGCCcGGcgcucgccuUCGACCcCgagGCGCUGGCCg -3'
miRNA:   3'- -CGCGGaCU---------AGCUGGaGa--CGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 135511 0.71 0.579569
Target:  5'- aGCGCaa-GUCGGCCggggccaggggcccgGCGCCGGCCa -3'
miRNA:   3'- -CGCGgacUAGCUGGaga------------CGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 134704 0.66 0.8503
Target:  5'- cGCGCCgaggCGGCCgCcGCGCuggagCGGCCg -3'
miRNA:   3'- -CGCGGacuaGCUGGaGaCGCG-----GCUGG- -5'
23581 3' -57.9 NC_005261.1 + 134441 0.66 0.81775
Target:  5'- uGCGCgagCUGGcgGACCgCUGCGCugCGGCCu -3'
miRNA:   3'- -CGCG---GACUagCUGGaGACGCG--GCUGG- -5'
23581 3' -57.9 NC_005261.1 + 134365 0.69 0.656827
Target:  5'- cGCGCCgUGcucgcCGGCCgcgCgGCGCCGGCg -3'
miRNA:   3'- -CGCGG-ACua---GCUGGa--GaCGCGGCUGg -5'
23581 3' -57.9 NC_005261.1 + 133958 0.76 0.322196
Target:  5'- gGCGCaUGuUCGGCCUUUGCcgcaacgacGCCGACCu -3'
miRNA:   3'- -CGCGgACuAGCUGGAGACG---------CGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 133827 0.66 0.83438
Target:  5'- gGCG-CUGcgCGGCCgCgugcGCGCCGugGCCg -3'
miRNA:   3'- -CGCgGACuaGCUGGaGa---CGCGGC--UGG- -5'
23581 3' -57.9 NC_005261.1 + 133362 0.68 0.754837
Target:  5'- cGCGCagggcuUCGGCUgcCUGCGCgCGGCCc -3'
miRNA:   3'- -CGCGgacu--AGCUGGa-GACGCG-GCUGG- -5'
23581 3' -57.9 NC_005261.1 + 133357 0.67 0.782599
Target:  5'- cGCGgCUGAggCGGCCgUCgugGCcGCCGcCCu -3'
miRNA:   3'- -CGCgGACUa-GCUGG-AGa--CG-CGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 133289 0.69 0.656827
Target:  5'- gGCGCCUGGgccgCGGCgCgg-GCGCucgCGGCCg -3'
miRNA:   3'- -CGCGGACUa---GCUG-GagaCGCG---GCUGG- -5'
23581 3' -57.9 NC_005261.1 + 132707 0.69 0.676849
Target:  5'- cGCGCCgaagccggCGGCCUC-GcCGCCGugCc -3'
miRNA:   3'- -CGCGGacua----GCUGGAGaC-GCGGCugG- -5'
23581 3' -57.9 NC_005261.1 + 132449 0.69 0.666852
Target:  5'- aGCGCgUGccccUCGGCCgcccUCcGCGCCGGCa -3'
miRNA:   3'- -CGCGgACu---AGCUGG----AGaCGCGGCUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.