miRNA display CGI


Results 21 - 40 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23581 3' -57.9 NC_005261.1 + 131809 0.69 0.686811
Target:  5'- cGCGCCUGA-CGGC----GCGCCG-CCg -3'
miRNA:   3'- -CGCGGACUaGCUGgagaCGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 130582 0.71 0.576582
Target:  5'- aGCGCCgccGcgCGGCC-CcGCGCCuGGCCc -3'
miRNA:   3'- -CGCGGa--CuaGCUGGaGaCGCGG-CUGG- -5'
23581 3' -57.9 NC_005261.1 + 129315 0.69 0.656827
Target:  5'- cGCGCCUGcgCuggcGCCgcguCGCCGACCu -3'
miRNA:   3'- -CGCGGACuaGc---UGGagacGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 129061 0.66 0.842432
Target:  5'- cGCGCCcuacguguuUGGUCGAUCgucCUGCaaccuucggggGCUGAUCg -3'
miRNA:   3'- -CGCGG---------ACUAGCUGGa--GACG-----------CGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 127180 0.69 0.666852
Target:  5'- gGCGCCUGggCGGCgCcCgaGUGCCG-CCg -3'
miRNA:   3'- -CGCGGACuaGCUG-GaGa-CGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 126540 0.67 0.782599
Target:  5'- cGCGCC---UCGGCCac-GCGCCG-CCg -3'
miRNA:   3'- -CGCGGacuAGCUGGagaCGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 126460 0.66 0.842432
Target:  5'- cGCGCCaGcgCGcucGCCUCgcgguaguaccGCGCCG-CCa -3'
miRNA:   3'- -CGCGGaCuaGC---UGGAGa----------CGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 126407 0.66 0.82615
Target:  5'- gGCGCCaaga-GACUUCgcGCGCCGucGCCa -3'
miRNA:   3'- -CGCGGacuagCUGGAGa-CGCGGC--UGG- -5'
23581 3' -57.9 NC_005261.1 + 126272 0.68 0.758598
Target:  5'- uGCGCCUGGagCGcgcgccgggcgagccGCCgcgGCGCgGGCCg -3'
miRNA:   3'- -CGCGGACUa-GC---------------UGGagaCGCGgCUGG- -5'
23581 3' -57.9 NC_005261.1 + 126088 0.67 0.773464
Target:  5'- gGgGCCUGcgCGGCCgCcGCGgCGGCg -3'
miRNA:   3'- -CgCGGACuaGCUGGaGaCGCgGCUGg -5'
23581 3' -57.9 NC_005261.1 + 125877 0.69 0.646783
Target:  5'- cGCGCC-GGUUGccGCCgcggcggcggCcGCGCCGGCCa -3'
miRNA:   3'- -CGCGGaCUAGC--UGGa---------GaCGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 125594 0.67 0.782599
Target:  5'- cGCGCCgGGUCGaaagcGCCaCUGC-CCGcCCg -3'
miRNA:   3'- -CGCGGaCUAGC-----UGGaGACGcGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 125586 0.67 0.773464
Target:  5'- cGCGCCgGcgCGGCCccagaCcGCGCCgGACUa -3'
miRNA:   3'- -CGCGGaCuaGCUGGa----GaCGCGG-CUGG- -5'
23581 3' -57.9 NC_005261.1 + 125065 0.72 0.483663
Target:  5'- -aGCCUGGUCGucACCUCggaccgccuggugcGCGCCGucACCg -3'
miRNA:   3'- cgCGGACUAGC--UGGAGa-------------CGCGGC--UGG- -5'
23581 3' -57.9 NC_005261.1 + 124693 0.67 0.766996
Target:  5'- aGCGCCguucucggccagcAUCGACUgguauuuUUUGCgGCCGGCCg -3'
miRNA:   3'- -CGCGGac-----------UAGCUGG-------AGACG-CGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 124345 0.7 0.596549
Target:  5'- aGCGCCucagUGggCGGCauugCUGCGCCGuCUa -3'
miRNA:   3'- -CGCGG----ACuaGCUGga--GACGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 123871 0.67 0.800468
Target:  5'- cGCGCCgcccCGGCCgcggCUGCuGCCGcugcugcuGCCg -3'
miRNA:   3'- -CGCGGacuaGCUGGa---GACG-CGGC--------UGG- -5'
23581 3' -57.9 NC_005261.1 + 122691 0.71 0.576582
Target:  5'- uGCGCCUGcuccAUCG-CCgcgcCGCCGGCCg -3'
miRNA:   3'- -CGCGGAC----UAGCuGGagacGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 122414 0.66 0.842432
Target:  5'- gGUGCCUG-UUGcuCUUCUggguggcgGCGCUGGCCg -3'
miRNA:   3'- -CGCGGACuAGCu-GGAGA--------CGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 122352 0.68 0.726135
Target:  5'- uCGCCUGG-CGGCCgcggCU-CGCgCGGCCc -3'
miRNA:   3'- cGCGGACUaGCUGGa---GAcGCG-GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.